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. 2004 Jul;186(14):4543–4555. doi: 10.1128/JB.186.14.4543-4555.2004

TABLE 3.

Oligonucleotides used in this study

Function and name Sequencea Used for:
Construction of mutants
    LvRXh ACGCGCTCGAGATCAAAGATGTGATTCTTGC Cloning part of levR
    LvRPs CCAACTGCAGGAATCACAACTAATCAGGCT
    LvBBlunt ACCGCAATACTGTCCGAAC Cloning levB and inserting stop codons and restriction sites
    LvBMut1 CGTATTGATTAACGCATGCTTTAAGGCTTGATCACGGTTCGT
    LvBMut2 ATCAAGCCTTAAAGCATGCGTTAATCAATACGTACAAACGAA
    LvBNh AACCGCTTGGCTAGCCATTCATGAGTTGGAACATAAG
    LvXKp GACGGCGGTACCATTAACGATATGCGT Cloning levX and inserting stop codons and restriction sites
    LvXMut1 TAGACTAAGCTTTAAGAAAAAGAAGTTGCGTATCAG
    LvXMut2 TAAAGCTTAGTCTATTAGTCAATTGTCATTTTGATTTT
    LvXEc GCCGGAATTCCTTCACCGGATTGTC
    SLSp GTTGGTACTAGTGATCCGCACATTA Cloning part of rpoN and inserting stop codons and restriction sites
    SLMut1 ACGTAAGGGATCCGATAGTAAATTCAGATGTTGCAAT
    SLMut2 TTTACTATCGGATCCCTTACGTTAGCACCAACTTATTG
    SLBlunt TCTGCAAATACCAGCTCAG
Overexpression of genes
    QEABA AGGGATGGGATCCATGAAATATTTGCTTCTTG Cloning levA
    QEAKP TTTTGCTGGTACCTTAAATATCGTCGTCGTC
    QEBBA AGGAGTGGGATCCATGGCAATTTCGTTTGTA Cloning levB
    QEBKP TATTGTGGTACCATTAATACCCAAAGCG
    H3-1 CAGATCACATATGGAAAAACGCGAAT Cloning ptsHI47T
    H3-2 GCAGAGATCTCCTTCAAATGTTCAG
    MalRXBA GGTGTCTAGAATGAACGCAGTAGAAAAACTTTATG Cloning levR
    MalRPST CCTTTTTGTCTGCAGATCACGCCACAAAAATAGAGT
    MH1A TGTGTTCGCCGGCAGCAAGCAGGATGGCATTGTA levR His488Ala mutation
    MH1B ATCCTGCTTGCTGCCGGCGAACACACCGCATCGAG
    MH2A TTAAGGACAAGGCCATGAAGAGATTGAGCTTTAG levR His776Ala mutation
    MH2B AATCTCTTCATGGCCTTGTCCTTAATGATTGAACG
Detection of the transcriptionnal start site
    EIIA2 GTTTGCTTTAAGCCACTGG Identification of the transcription start site of the lev operon
    EIIA5 CATCAATGTGGTTAACGCCA
    EIIA6 CCAGAACAACAAAGCTTGCA
    levR5 ACGACGAATGGCTTCGTG Identification of the transcription start site of levR
    levR6 TGCTTCGATTGCCAGCTG
    levr7 CATCGGCAGCCTGATTAG
a

Letters in boldface type indicate newly created restriction sites; newly created stop codons or mutations are underlined.