Table 1.
Summary of transposons in 3 Cen8 sequences.
| Genomes | Nipponbare | O. glaberrima | Kasalath | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Copy no. | Coverage (bp) | Content (%) | Copy no. | Coverage (bp) | Content (%) | Copy no. | Coverage (bp) | Content (%) | |
| CLASS I | |||||||||
| Ty1-copia | 33 | 73,608 | 3.04 | 19 | 47,671 | 3.63 | 32 | 78,959 | 3.51 |
| Ty3-gypsy | 322 | 1,313,356 | 54.20 | 209 | 736,593 | 56.07 | 293 | 1,296,074 | 57.62 |
| Other | 11 | 6278 | 0.26 | 6 | 3,918 | 0.30 | 3 | 1009 | 0.04 |
| Total Class I | 366 | 1,393,242 | 57.50 | 234 | 788,182 | 60.00 | 328 | 1,376,042 | 61.17 |
| CLASS II | |||||||||
| hAT | 47 | 39,572 | 1.63 | 16 | 6149 | 0.47 | 34 | 28,951 | 1.29 |
| CACTA | 32 | 66,688 | 2.75 | 9 | 34,971 | 2.66 | 24 | 58,694 | 2.61 |
| Mutator | 121 | 82,342 | 3.40 | 59 | 34,986 | 2.66 | 96 | 65,284 | 2.90 |
| Harbinger | 23 | 19,643 | 0.81 | 14 | 21,941 | 1.67 | 16 | 17,181 | 0.76 |
| Helitron | 50 | 27,835 | 1.15 | 15 | 9319 | 0.71 | 39 | 31,267 | 1.39 |
| MITE/Stow | 84 | 16,554 | 0.68 | 36 | 6798 | 0.52 | 65 | 13,302 | 0.59 |
| MITE/Tourist | 134 | 29,745 | 1.23 | 48 | 9753 | 0.74 | 104 | 23,801 | 1.06 |
| Other | 1 | 111 | 0.005 | 1 | 111 | 0.01 | 1 | 111 | 0.005 |
| Total Class II | 492 | 282,490 | 11.66 | 198 | 124,028 | 9.44 | 379 | 238,591 | 10.61 |
| Total TEs | 858 | 1,675,732 | 69.15 | 432 | 912,210 | 69.44 | 707 | 1,614,633 | 71.78 |