Table 2. Structure solution and refinement.
Values in parentheses are for the outer shell.
| PDB code | 4wld | 4wlt | 4wlx | 4wly | 4wm1 | 4wm2 | 4wm3 | 4wm4 | 4wm5 | 4wm6 | 4xen |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Pressure (MPa) | 0.1 | 190 | 280 | 380 | 500 | 600 | 710 | 800 | 890 | 950 | 920 |
| No. of reflections, working set | 16667 | 15188 | 15164 | 13435 | 14528 | 14593 | 15945 | 14276 | 14298 | 30495 | 15797 |
| No. of reflections, test set | 896 | 800 | 794 | 716 | 762 | 766 | 851 | 752 | 758 | 1606 | 839 |
| R work † (%) | 14.51 | 15.30 | 15.18 | 15.45 | 16.01 | 15.53 | 18.14 | 16.76 | 16.30 | 19.92 | 16.40 |
| R free ‡ (%) | 17.42 | 19.70 | 19.31 | 19.38 | 20.80 | 20.09 | 25.91 | 22.38 | 21.67 | 28.45 | 20.94 |
| Cruickshank DPI | 0.07 | 0.08 | 0.08 | 0.10 | 0.09 | 0.09 | 0.09 | 0.10 | 0.09 | 0.24 | 0.09 |
| No. of non-H atoms | |||||||||||
| Protein | 1009 | 1031 | 1031 | 1031 | 1020 | 1025 | 1023 | 1032 | 1026 | 4013 | 1063 |
| Ligand/ion | 1 | 7 | 7 | 7 | 7 | 5 | 4 | 5 | 5 | 4 | 62 |
| Water | 100 | 118 | 129 | 135 | 142 | 144 | 149 | 164 | 171 | 615 | 172 |
| Total | 1110 | 1156 | 1167 | 1173 | 1169 | 1174 | 1176 | 1201 | 1202 | 4632 | 1297 |
| B factor (2) | |||||||||||
| Protein | 25.14 | 18.79 | 16.99 | 19.32 | 17.63 | 14.65 | 16.76 | 15.74 | 16.28 | 17.38 | 11.92 |
| Ligand/ion | 39.51 | 37.17 | 34.76 | 34.14 | 29.83 | 27.80 | 22.17 | 29.27 | 28.95 | 29.56 | 23.32 |
| Water | 38.72 | 33.21 | 32.34 | 34.41 | 33.10 | 28.64 | 29.78 | 30.53 | 30.31 | 24.16 | 27.08 |
| R.m.s.d. from ideality | |||||||||||
| Bond lengths () | 0.024 | 0.024 | 0.024 | 0.024 | 0.025 | 0.022 | 0.022 | 0.025 | 0.023 | 0.015 | 0.021 |
| Bond angles () | 2.166 | 2.151 | 2.146 | 2.099 | 2.157 | 2.132 | 2.132 | 2.011 | 2.036 | 1.728 | 2.202 |
| Ramachandran plot | |||||||||||
| Most favoured (%) | 99 | 99 | 98 | 98 | 98 | 98 | 98 | 98 | 98 | 96 | 97 |
| Allowed (%) | 1 | 1 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 4 | 3 |
R
work is defined as
.
R free is calculated using 5% of the data that were randomly chosen and excluded from the refinement.