Table 4. A comparison of core chlorophyte mtDNAs.
GenBank Accession # | Genome size (Kbp) | Conformation | AT (%) | Total genes a | Protein-coding genes | tRNA genes | rRNA genes | Free-standing ORFs b | Coding DNA (%) c | Introns | Intronic ORFs | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Ulvophyceae | ||||||||||||
Ulva sp. UNA00071828 | KP720617 | 73.5 | circular | 67.6 | 56 | 29 | 25 | 2 | 9 | 75.8 | 10 | 12 |
Oltmannsiellopsis viridis | NC_008256 | 56.8 | circular | 66.6 | 54 | 27 | 24 | 3 | 5 | 66.2 | 3 | 4 |
Pseudendoclonium akinetum | NC_005926 | 95.9 | circular | 60.7 | 57 | 30 | 25 | 2 | 15 | 56.7 | 7 | 6 |
Trebouxiophyceae | ||||||||||||
Prototheca wickerhamii | NC_001613 | 55.3 | circular | 74.2 | 58 | 29 | 26 | 3 | 5 | 70.6 | 5 | 2 |
Helicosporidium sp. | NC_017841 | 49.3 | circular | 74.4 | 60 | 32 | 25 | 3 | 2 | 75.7 | 3 | 3 |
Trebouxiophyceae sp. | NC_018568 | 74.4 | circular | 46.6 | 56 | 30 | 23 | 3 | 3 | 68.2 | 10 | 8 |
Chlorella sorokiniana | NC_024626 | 52.5 | circular | 66.6 | 60 | 32 | 25 | 3 | 1 | 64.1 | 0 | 0 |
Coccomyxa sp. | NC_015316 | 65.5 | circular | 46.8 | 59 | 30 | 26 | 3 | 0 | 59.1 | 5 | 1 |
Chlorophyceae | ||||||||||||
Polytomella magna | NC_023091 | 24.4 | linear | 65.2 | 40 | 14 | 2 | 24 | 0 | 87.1 | 0 | 0 |
Polytomella capuana | NC_010357 | 13 | linear | 42.8 | 20 | 7 | 1 | 12 | 0 | 82 | 0 | 0 |
Chlamydomonas reinhardtii | EU306620 | 19 | linear | 55.4 | 23 | 8 | 3 | 12 | 0 | 84.2 | 3 | 3 |
Chlamydomonas eugametos | NC_001872 | 22.9 | circular | 65.4 | 20 | 7 | 4 | 9 | 0 | 84.5 | 9 | 7 |
Dunaliella salina | NC_012930 | 28.3 | circular | 69.7 | 19 | 7 | 3 | 9 | 0 | 69.7 | 18 | 2 |
Gonium pectorale | NC_020437 | 16 | circular | 61.3 | 23 | 7 | 4 | 12 | 0 | 19 | 1 | 1 |
Pleodorina starrii | NC_021108 | 20.4 | circular | 62 | 22 | 7 | 3 | 12 | 0 | 80.6 | 3 | 3 |
Acutodesmus obliquus | NC_002254 | 42.8 | circular | 63.8 | 47 | 14 | 27 | 6 | 4 | 51.9 | 3 | 2 |
Bracteacoccus aerius | NC_024755 | 47.2 | circular | 52.9 | 43 | 13 | 24 | 6 | 2 | 48 | 3 | 2 |
Pedinophyceae | ||||||||||||
Pedinomonas minor | NC_000892 | 25.1 | circular | 77.8 | 23 | 11 | 9 | 3 | 0 | 60.5 | 1 | 0 |
a A sum of protein-coding genes, tRNA genes, rRNA genes
b ORFs > 300 bp
c % of genome consisting of conserved genes (including introns) and ORFs > 300 bp