Table 1. Summary of RNA-seq alignment.
Sample ID | Total tags (Million) | Mapping rate% | CDS exons (%) | 5' UTR (%) | 3'UTR (%) | Intron (%) |
---|---|---|---|---|---|---|
H611 | 44.92 | 79.98 | 65.20 | 1.73 | 11.90 | 5.42 |
H1103 | 42.73 | 80.91 | 67.88 | 1.76 | 11.74 | 4.70 |
H710 | 47.36 | 82.69 | 72.90 | 1.57 | 10.20 | 3.51 |
H712 | 43.69 | 85.79 | 71.00 | 1.08 | 10.32 | 4.52 |
H906 | 45.26 | 82.96 | 68.69 | 1.54 | 11.47 | 4.50 |
H909 | 39.29 | 85.79 | 66.94 | 1.05 | 11.20 | 6.04 |
BH: Songliao Black pigs with higher backfat of live group
BL:Songliao Black pigs with lower backfat of live group
H710, H712 and H906, H909 are two pair full-sibs pigs. H710, H906,H611 and H712, H909, H1103 are the BH and BL groups respectively.