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. 2015 Apr 7;10(4):e0121139. doi: 10.1371/journal.pone.0121139

Table 1. PCR primers and annealing temperatures used to amplify mitochondrial and nuclear markers in this study.

Gene Primer Sequence (5'–to–3') PCR steps § T A (annealing temperature,°C) Reference
cytb L14725 GAYTTGAARAACCAYCGTTG Single PCR 48 Hrbek et al. [106]
H15982 CCTAGCTTTGGGAGYTAGG Single PCR 48 Hrbek et al. [106]
cox1 FISH-F1 TCAACCAACCACAAAGACATTGGCAC Single PCR 48–49 Ward et al. [107]
FISH-R1 TAGACTTCTGGGTGGCCAAAGAATCA Single PCR 48–49 Ward et al. [107]
ldh-A LDHA6F2 GYGGAGAGCATCSWKAAGAACMTGC Single PCR 48–49 Quattro & Jones [108]
LDHA6R* GCTSAGGAASACCTCRTCCTTCAC Single PCR 48–49 Quattro & Jones [108]
RPS7 1F TGGCCTCTTCCTTGGCCGTC 1st PCR 52 Chow & Takeyama [109]
3R GCCTTCAGGTCAGAGTTCAT 1st PCR 52 Chow & Takeyama [109]
1F.2 CTCTTCCTTGGCCGTCGTTG 2nd PCR–1 52 Unmack et al. [74]
2R.67 TACCTGGGARATTCCAGACTC 2nd PCR–1 52 Unmack et al. [74]
2F.2.cat GCCATGTTCAGTACCAGTGC 2nd PCR–2 52 Unmack et al. [74]
3R.10 TCAGAGTTCATCTCCAGCTC 2nd PCR–2 52 Unmack et al. [74]
X-src SRC.E7.1F TGACAGACGTTTGTCCCGTACTGAAGC 1st PCR 52 Peter J. Unmack
SRC.E10.endR ATGAGKCGAGCCAGACCGAAATCAGC 1st PCR 52 Peter J. Unmack
SRC.E8.1F CTGAAGCCTGGCACCATGTC 2nd PCR 52 Peter J. Unmack
SRC.E10.end2R CCGAAATCAGCCACTTTACAMACCAG 2nd PCR 52 Peter J. Unmack
X-yes Yes F1 GAGAGAATGAACTACATCCATAG 1st PCR 52 Peter J. Unmack
Yes R1 GACCACACGTCTGATTTGATTGTGAA 1st PCR 52 Peter J. Unmack
Yes F2 GACAACCTGGTCTGTAAGATCGC 2nd PCR 52 Peter J. Unmack
Yes R2 GATTTGATTGTGAAGCGACCGTACA 2nd PCR 52 Peter J. Unmack
Glyt Glyt_F559 GGACTGTCMAAGATGACCACMT 1st PCR 55 Li et al. [110]
Glyt_R1562 CCCAAGAGGTTCTTGTTRAAGAT 1st PCR 55 Li et al. [110]
Glyt_F577 ACATGGTACCAGTATGGCTTTGT 2nd PCR 62 Li et al. [110]
Glyt_R1464 GTAAGGCATATASGTGTTCTCTCC 2nd PCR 62 Li et al. [110]

§Single PCR, only one PCR performed; 1st PCR or 2nd PCR, indicates the sequence in a nested set. Note also that a number n preceded by a dash in this column (e.g. “–2”) indicates the nth second PCR step in a set of nested reactions.