Table 1. PCR primers and annealing temperatures used to amplify mitochondrial and nuclear markers in this study.
Gene | Primer | Sequence (5'–to–3') | PCR steps § | T A (annealing temperature,°C) | Reference |
---|---|---|---|---|---|
cytb | L14725 | GAYTTGAARAACCAYCGTTG | Single PCR | 48 | Hrbek et al. [106] |
H15982 | CCTAGCTTTGGGAGYTAGG | Single PCR | 48 | Hrbek et al. [106] | |
cox1 | FISH-F1 | TCAACCAACCACAAAGACATTGGCAC | Single PCR | 48–49 | Ward et al. [107] |
FISH-R1 | TAGACTTCTGGGTGGCCAAAGAATCA | Single PCR | 48–49 | Ward et al. [107] | |
ldh-A | LDHA6F2 | GYGGAGAGCATCSWKAAGAACMTGC | Single PCR | 48–49 | Quattro & Jones [108] |
LDHA6R* | GCTSAGGAASACCTCRTCCTTCAC | Single PCR | 48–49 | Quattro & Jones [108] | |
RPS7 | 1F | TGGCCTCTTCCTTGGCCGTC | 1st PCR | 52 | Chow & Takeyama [109] |
3R | GCCTTCAGGTCAGAGTTCAT | 1st PCR | 52 | Chow & Takeyama [109] | |
1F.2 | CTCTTCCTTGGCCGTCGTTG | 2nd PCR–1 | 52 | Unmack et al. [74] | |
2R.67 | TACCTGGGARATTCCAGACTC | 2nd PCR–1 | 52 | Unmack et al. [74] | |
2F.2.cat | GCCATGTTCAGTACCAGTGC | 2nd PCR–2 | 52 | Unmack et al. [74] | |
3R.10 | TCAGAGTTCATCTCCAGCTC | 2nd PCR–2 | 52 | Unmack et al. [74] | |
X-src | SRC.E7.1F | TGACAGACGTTTGTCCCGTACTGAAGC | 1st PCR | 52 | Peter J. Unmack |
SRC.E10.endR | ATGAGKCGAGCCAGACCGAAATCAGC | 1st PCR | 52 | Peter J. Unmack | |
SRC.E8.1F | CTGAAGCCTGGCACCATGTC | 2nd PCR | 52 | Peter J. Unmack | |
SRC.E10.end2R | CCGAAATCAGCCACTTTACAMACCAG | 2nd PCR | 52 | Peter J. Unmack | |
X-yes | Yes F1 | GAGAGAATGAACTACATCCATAG | 1st PCR | 52 | Peter J. Unmack |
Yes R1 | GACCACACGTCTGATTTGATTGTGAA | 1st PCR | 52 | Peter J. Unmack | |
Yes F2 | GACAACCTGGTCTGTAAGATCGC | 2nd PCR | 52 | Peter J. Unmack | |
Yes R2 | GATTTGATTGTGAAGCGACCGTACA | 2nd PCR | 52 | Peter J. Unmack | |
Glyt | Glyt_F559 | GGACTGTCMAAGATGACCACMT | 1st PCR | 55 | Li et al. [110] |
Glyt_R1562 | CCCAAGAGGTTCTTGTTRAAGAT | 1st PCR | 55 | Li et al. [110] | |
Glyt_F577 | ACATGGTACCAGTATGGCTTTGT | 2nd PCR | 62 | Li et al. [110] | |
Glyt_R1464 | GTAAGGCATATASGTGTTCTCTCC | 2nd PCR | 62 | Li et al. [110] |
§Single PCR, only one PCR performed; 1st PCR or 2nd PCR, indicates the sequence in a nested set. Note also that a number n preceded by a dash in this column (e.g. “–2”) indicates the nth second PCR step in a set of nested reactions.