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. 2015 Apr 7;10(4):e0123270. doi: 10.1371/journal.pone.0123270

Table 1. Bacterial strains and plasmids used in this study.

Strain of plasmid Characteristic a Source or reference
Strain
Escherichia coli
   DH5α General cloning host
   ET12567 / pUZ8002 Strain for intergeneric conjugation; Kmr, Cmr [37]
Pseudonocardia autotrophica
   KCTC9441 Wild-type, NPP producing strain KCTC
   ESK601 nppDI mutant producing 10-deoxyaglycone [23]
   ESK602 nppDI-complemented ESK601 [23]
   ESK6011 nppY mutant producing 10-deoxynystatin This work
   ESK6012 nppY-complemented ESK6011 This work
   ESK60111 ESK6011 harboring plasmid pYM1 This work
   ESK60112 ESK6011harboring plasmid pYM2 This work
   ESK60113 ESK6011 harboring plasmid pYM3 This work
   ESK60114 ESK6011 harboring plasmid pYM4 This work
   ESK60115 ESK6011 harboring plasmid pYM5 This work
   ESK60116 ESK6011 harboring plasmid pYM6 This work
   ESK60117 ESK6011 harboring plasmid pYM7 This work
   ESK60118 ESK6011 harboring plasmid pYM8 This work
   ESK60119 ESK6011 harboring plasmid pYM9 This work
   ESK6021 nppL mutant producing C10 deoxy NPP This work
   ESK6022 nppL-complemented ESK6021 This work
   ESK611 nppDI nppY double mutant producing 10-deoxyaglycone This work
   ESK612 nppDI-complemented ESK611 This work
   ESK613 nppY-complemented ESK611 This work
   ESK614 nppDI nppY-double complemented ESK611 This work
   ESK621 nppDI nppL double mutant producing 10-deoxyaglycone This work
   ESK622 nppDI-complemented ESK621 This work
   ESK623 nppL-complemented ESK621 This work
   ESK624 nppDI nppY-double complemented ESK621 This work
   ESK631 nppY nppL double mutant producing 10-deoxynystatin This work
   ESK632 nppY-complemented ESK631 This work
   ESK633 nppL-complemented ESK631 This work
   ESK634 nppY nppL-double complemented ESK631 This work
   ESK641 nppDI nppY nppL triple mutant producing 10-deoxyaglycone This work
   ESK642 nppDI-complemented ESK641 This work
   ESK643 nppDI nppY-complemented ESK641 This work
   ESK644 nppDI nppY nppL-complemented ESK641 This work
Plasmid
   pTY Template plasmid for nppY mutation, Amr This work
   pDELY Plasmid for deletion nppY gene, Aprr This work
   pDELL Plasmid for deletion nppL gene, Aprr This work
   ermE*pSET152 E. coli-P. autotrophica conjagative vector with constitutive promoter, ermE*, Aprr [38]
   pMJPDI Plasmid for nppDI complementation, Aprr [23]
   pPY Plasmid for nppY complementation, Aprr This work
   pPL Plasmid for nppL complementation, Aprr This work
   pPDIY Plasmid for nppDI nppY complementation, Aprr This work
   pPDIL Plasmid for nppDI nppL complementation, Aprr This work
   pPYL Plasmid for nppY nppL complementation, Aprr This work
   pYM1 pPY with additional 7 amino acids (FARSYTP), Hygr This work
   pYM2 pPY with A37N mutation, Hygr This work
   pYM3 pPY with E197K mutation, Hygr This work
   pYM4 pPY with R200N mutation, Hygr This work
   pYM5 pPY with I201Q mutation, Hygr This work
   pYM6 pPY with R219V mutation, Hygr This work
   pYM7 pPY with R247E mutation, Hygr This work
   pYM8 pPY with I385Y mutation, Hygr This work
   pYM9 pPY combined with C-terminal domain of NppDI, Hygr This work

aKmr, kanamycin resistance; Cmr, chloramphenicol resistance; Amr, ampicillin resistance; Aprr, apramycin resistance; Hygr, hygromycin resistance.