Table 2. Description of MySQL database tables.
Table | Description |
---|---|
gene | The lncRNA genes and the Ensembl genes. |
transcript | The lncRNA transcripts and the Ensembl transcripts. |
expression | The expression levels of all genes. |
neighborgenes | The neighboring genes of each gene. |
neighborlnc | The neighboring lncRNA genes of each protein-coding gene. |
qtl | The QTL data. |
overlapqtl | The overlap between genes/transcripts and QTLs. |
exon | The start and end locations of each exon. |
sequence | The nucleotide sequence of each transcript. |