Table 2.

MHC class II (I-Ab)-bound C. trachomatis serovar D-derived peptides and their source proteins identified when C57BL/6 bone marrow derived dendritic cells were infected with live C. trachomatis for 12 h.

Peptide	Chlamydia trachomatis locus#	Source proteins	Protein abbrev.
YKLVYQNALSNFSGKK	CT045	Leucyl aminopeptidase	PepA
GPKGRHVVIDKSFGSPQVTKDGVT	CT110	Chaperonin GroEL1 41	Hsp60
EERVVGQPFAIAAVSDS	CT113	Clp Protease ATPase	ClpB
DLKVTGPTIHTDLD	CT143	Hypothetical protein 33	CT143
GKLIVTNPKSDISFGG	CT144	Hypothetical protein 60	CT144
GSPGQTNYAAAKAGIIGFS	CT237	3-Ketoacyl-(acyl-carrier-protein) reductase	FabG
GTKTPIGTPIAVFSTEQ	CT247	Dihydrolipoamide acetyltransferase 51	PdhC
SPKEAAIAAARASLSPEEKR	CT289	Hypothetical protein	CT289
YDHIIVTPGANADILPE	CT375	Predicted d-amino acid dehydrogenase	CT375
FDGEKASVGAPTVGNAVVKG	CT420	50S ribosomal protein L21 33	Rl21
KLDGVSSPAVQESISESL	CT424	Sigma regulatory factor	RsbV
TPSAVNPLPNPEIDS	CT472	Hypothetical protein	CT472
DSTHGSFAPQATFSDG	CT505	Glyceraldehyde-3-phosphate dehydrogenase	GapA
VKGNEVFVTPAAHVVDRPG	CT514	50S ribosomal protein L6	RplF
ETPGAAEGAEAQTASEQPSKENAEKQEENNED	CT559	Yop proteins translocation lipoprotein	CdsJ
ADVLLLSPKASVSPGG	CT561	Type III secretion translocase 46	CdsL
IPFAKPDANLSAED	CT619	Hypothetical protein	CT619
KAPQFGYPAVQNSADS	CT622	CHLPN 76 kDa homolog	CT622
KEGEEDTAESAANEEPKAEASQEEE	CT664	FHA domain; homology to adenylate cyclase	CT664
IFDTTTLNPTIAGAGDVK	CT681	Major outer membrane protein 45	MOMP
TPVESTTPVAPEISVVNAK	CT759	Muramidase (invasin repeat family)	NlpD
QVFQLITQVTGRSG	CT778	Primosome assembly protein	PriA
ISYDYSSGNAEASSHN	CT837	Hypothetical protein	CT837
DAGVPIKAPVAGIAMG	CT842	Polyribonucleotide Nucleotidyltransferase	Pnp
GSVVFSGATVNSADFH	CT869	Polymorphic membrane protein E	PmpE
AMANEAPIAFIANVAG	CT871	Polymorphic membrane protein G	PmpG
AEKGGGAIYAPTIDISTNGGS	CT872	Polymorphic membrane protein H	PmpH