TABLE 1.
Nocardia sp. (no. of strains; no. of provinces) | Clinical origin(s) | Strain agreement between 16S and gyrB (no. of strains/total no. of strains) |
---|---|---|
Commonly reported group (40 isolates) | ||
N. brasiliensis (10; 8) | 4 sputum, 2 cutaneous abscess, 4 wound | 10/10 |
N. carnea (10; 5) | 7 sputum, 1 gastric juice, 1 BAL fluid,b 1 perianal exudate | 3/10 |
N. otitidiscaviarum (10; 8) | 7 sputum, 2 pleural liquid, 1 BAL fluid | 10/10 |
N. transvalensis (10; 8) | 6 sputum, 1 cornea, 1 wound, 1 BAL fluid, 1 cutaneous abscess | 0/10 |
Unusually reported species (35 isolates) | ||
N. arthritidis (1; 1) | 1 BAL fluid | 1/1 |
N. asteroides (2; 2) | 2 sputum | 1/2 |
N. beijingensis (4; 3) | 3 sputum, 1 BAL fluid | 2/4 |
N. elegans (1; 1) | 1 sputum | 0/1 |
N. exalbida (1; 1) | 1 pulmonary puncture | 0/1 |
N. flavorosea (1; 1) | 1 sputum | 0/1 |
N. higoensis (1; 1) | 1 sputum | 0/1 |
N. ignorata (4; 2) | 2 sputum, 1 wound, 1 gastric juice | 4/4 |
N. jiangxiensis (1; 1) | 1 sputum | 0/1 |
N. paucivorans (2; 2) | 1 sputum, 1 BASc | 2/2 |
N. pneumoniae (1; 1) | 1 BAS | 1/1 |
N. puris (2; 2) | 2 sputum | 2/2 |
N. rhamnosiphila cluster (4; 3) | 3 sputum, 1 BAS | 1/4 |
N. takedensis (3; 2) | 3 sputum | 3/3 |
N. testacea (3; 1) | 3 sputum | 2/3 |
N. veterana (1; 1) | 1 sputum | 1/1 |
N. vinacea (1; 1) | 1 nodule | 1/1 |
N. wallacei (2; 2) | 2 sputum | 0/2 |
Nocardia species were classified according to their full 16S sequences.
BAL, bronchoalveolar lavage.
BAS, bronchoaspirate.