Table 1. Pearson correlation coefficients between MS protein abundance and ribo-seq coverage.

MS protein identifications were performed with an FDR of 1% and protein abundances were calculated as emPAI and NSAF values. The correlation coefficients were computed for each of the following transcript filtering settings: i) all dbTIS transcripts without additional thresholds, ii) only transcripts with a validated MS identification (i.e. transcripts with a spectral count value > 2), iii) only dbTIS transcripts with a total RPF count ≥ 200 and iv) only dbTIS transcripts with both a validated MS/MS-based identification and an RPF count ≥ 200.

	i	ii	iii	iv
1% FDR
emPAI	0.488	0.498	0.483	0.518
NSAF	0.608	0.642	0.634	0.664