Table 3.

Intervals of linkage disequilibrium (LD) containing significant marker-trait associations for different traits related to germination performance in seeds of an oilseed rape diversity panel produced in Le Rheu, France in 2011 (SL2011) and Asendorf, Germany in 2012 (SL2012), respectively: Chromosome (Chr), Chromosomal position in base pairs [LD interval (bp)], narrow-sense heritability (h²), additive allelic effect (Add. eff.), logarithmic scaled P-value (−log₁₀(p)).

Trait	Chr	LD interval (bp)	SL2011			SL2012
			h2	Add. eff.	−log10(p)	h2	Add. eff.	−log10(p)
TSW	A1	2,094,614 – 2,132,814	0.84	−0.23	3.28	0.76	−0.23	2.65
	A5	18,641,259 – 18,796,724		−0.28	2.53		−0.35	3.11
	A6	22,333,133 – 22,588,108		0.26	5.32		0.19	2.95
	C6	21,335,770 – 21,666,697		−0.13	2.66		−0.15	3.07
VI	C7	41,147,197 – 41,318,742	0.23	1.69	3.43	0.18	2.05	2.69
FG	C7	35,089,636 – 35,279,703	0.21	0.91	2.60	0.29	1.11	4.07
T50	A9	32,206,450 – 32,410,348	0.34	2.76	4.80	0.86	1.98	3.06
	C6	31,736,330 – 32,133,403		1.10	2.74		1.23	3.85
	C8	36,326,419 – 36,384,818		1.46	2.60		1.41	3.02
GR36	C8	36,326,419 – 3,638,4818	0.50	−8.36	3.47	0.77	−6.64	2.76
GR72	A3	4,478,594 – 4,515,865	0.07	−2.01	3.16	0.00	−1.78	4.28
		7,082,702 – 7,098,892		−1.96	2.64		−1.82	3.69
		16,074,818 – 16,173,009		−2.44	3.43		−2.01	4.22
	A4	4,102,377 – 4,144,135		−2.37	3.41		−2.01	4.04
		4,260,229 – 4,302,660		−2.21	3.13		−1.99	4.33
		11,328,102 – 11,529,657		−2.17	3.03		−1.79	3.59
	A9	32,206,450 – 3,241,0348		−3.00	3.00		−2.86	3.16
	C6	31,736,330 – 32,133,354		−1.59	3.10		−1.06	2.58
	C9	42,980,135 – 43,015,797		−1.89	2.70		−1.91	4.68
ES	A9	6,512,728 – 7,122,368	0.62	−0.04	2.75	0.72	−0.05	4.22
	A10	11,631,861 – 11,677,068		−0.07	3.00		−0.08	3.14
		16,085,669 – 16,164,217		0.05	3.15		0.05	3.00
	C2	12,742,547 – 14,316,723		0.04	2.63		0.04	3.37
	C6	25,600,351 – 25,671,165		0.04	2.68		0.06	4.73

Abbreviations of traits are explained in Materials and Methods.