Table 1.
S. commersonii RNA-seq library description and number of unmapped reads to S. tuberosum Group Phureja DM genome
| Genotype | Treatment | ID | Total reads | Mapped reads to S. tuberosum Group Phureja DM genome (%) | Total mapped reads to S. tuberosum Group Phureja DM genome and S. comersonii pseudomolecule (%) | Total unmapped reads to S. tuberosum Group Phureja DM genome and S. comersonii pseudomolecule (%) |
|---|---|---|---|---|---|---|
| Resistant | Inoculated* | F118-inoc | 104.964.466 | 80,915,976 (77.1%) | 93,103,245 (88.7%) | 11,861,221 (11.3%) |
| Resistant | Mock-inoculated* | F118-control | 136.121.036 | 103,742,612 (76.2%) | 120,857,786 (88.8%) | 15,263,250 (11.2%) |
| Susceptible | Mock-inoculated* | F97-control | 76.995.583 | 60,065,956 (78.0%) | 68,045,457 (88.3%) | 8,950,126 (11.6%) |
| Susceptible | Inoculated* | F97-inoc | 150.998.983 | 117,725,715 (78.0%) | 133,722,765 (88.6%) | 17,276,218 (11.4%) |
| Susceptible | Mock-inoculated* | CA+CB:F97-control | 115.364.615 | 89,248,600 (77.4%) | 102,851,301 (89.2%) | 12,513,314 (10.9%) |
| Susceptible | Inoculated* | IA+IB:F97-inoc | 117.130.841 | 91,346,770 (78.0%) | 104,504,388 (89.2%) | 12,626,453 (10.8%) |
| Susceptible | Pool of RNA ** | F97 pool of RNA | 206.220.325 | 167,556,845 (81.2%) | 170,530,084 (82.7%) | 35,690,241 (17.3%) |
| Susceptible | Pool of RNA ** | F97 pool of RNA | 206.220.325 | 161,702,303 (78.4%) | 164,543,511 (79.8%) | 41,676,814 (29.2%) |
*Total RNA was pooled from root tissue.
**Total RNA was pooled from flower, stolon, stem and infected or non-infected root.