Table 3.
Genes up-regulated in both F97 and F118 accessions upon R. solanacearum infection
| Gene name | Annotation | F118 log(inoc/ctr) | F97 log(inoc/ctr) |
|---|---|---|---|
| Pathogen-responsive proteins | |||
| PGSC0003DMG401010492 | Acidic class II 1,3-beta-glucanase | 3,03 | 2,45 |
| PGSC0003DMG400010491 | Glucan endo-1,3-beta-D-glucosidase | 3,86 | 3,71 |
| PGSC0003DMG400010490 | Acidic class II 1,3-beta-glucanase | 2,97 | 2,39 |
| PGSC0003DMG400029830 | Glucan endo-1,3-beta-D-glucosidase | 2,70 | 3,08 |
| PGSC0003DMG400019437 | Pathogen-and wound-inducible antifungal protein CBP20 | 2,74 | 3,79 |
| PGSC0003DMG400044171 | P69E protein | 2,61 | 2,44 |
| PGSC0003DMG400045235 | P69E protein | 2,72 | 2,35 |
| PGSC0003DMG401003937 | P69B protein | 2,74 | 2,05 |
| PGSC0003DMG400003939 | Serine protease | 2,36 | 2,12 |
| PGSC0003DMG400030731 | Metallocarboxypeptidase inhibitor | 2,87 | 2,79 |
| Genes related to auxin metabolism | |||
| PGSC0003DMG401028570 | Phosphoglycerate/bisphosphoglycerate mutase family protein | 3,10 | 2,42 |
| PGSC0003DMG402028570 | Phosphoglycerate/bisphosphoglycerate mutase | 3,12 | 2,41 |
| PGSC0003DMG400021406 | Phytosulfokine peptide | 2,97 | 2,25 |
| PGSC0003DMG400024978 | Indole-3-acetic acid-amido synthetase GH3.3 | 2,02 | 2,14 |
| Genes related to cell death or plant defense | |||
| PGSC0003DMG400002029 | Cytoplasmic small heat shock protein class I | 2,98 | 3,55 |
| PGSC0003DMG400002028 | Cytoplasmic small heat shock protein class I | 2,98 | 3,55 |
| PGSC0003DMG400002027 | Cytoplasmic small heat shock protein class I | 2,98 | 3,55 |
| PGSC0003DMG400019956 | Glutathione s-transferase | 2,75 | 3,26 |
| PGSC0003DMG400010798 | Staygreen protein | 2,78 | 2,11 |
| PGSC0003DMG400017713 | LRR receptor-like serine/threonine-protein kinase | 2,68 | 2,02 |
| PGSC0003DMG400012992 | Receptor protein kinase | 3,13 | 2,73 |
| PGSC0003DMG400031325 | Nectarin 5 | 2,50 | 2,98 |
| Unknown function & putative proteins | |||
| PGSC0003DMG400002772 | Conserved gene of unknown function | 2,59 | 4,59 |
| PGSC0003DMG400007526 | Conserved gene of unknown function | 3,44 | 2,11 |
| PGSC0003DMG400031326 | Conserved gene of unknown function | 3.74 | 2,96 |
| PGSC0003DMG400016493 | Gene of unknown function | 2,46 | 3,60 |
| PGSC0003DMG400016351 | Conserved gene of unknown function | 2,68 | 2,99 |
| PGSC0003DMG400011404 | Gene of unknown function | 2,24 | 3,71 |
| Genes with uncertain function | |||
| PGSC0003DMG400026590 | Major pollen allergen Ory s 1 | 4,92 | 2,34 |
| PGSC0003DMG400027031 | Hydrogen peroxide-induced 1 | 3,06 | 3,03 |
| PGSC0003DMG400011226 | Sodium/potassium/calcium exchanger 6 | 3,10 | 3,13 |
| sci_locus_30986_iso_1_len_1653_ver_2 | Trypsin and protease inhibitor | 2,99 | 2,89 |
| PGSC0003DMG400012987 | Threonine dehydratase biosynthetic, chloroplastic | 6,88 | 4,67 |
| PGSC0003DMG400004690 | Metal ion binding protein | 4,68 | 3,75 |
log(inoc/ctr) stands for logarithm of FPKM in inoculated divided by FPKM in non-inoculated roots.