Table 4.
Other differentially expressed genes between accessions
| Gene name | Annotation | F118 log(inoc/ctr) | F97 log(inoc/ctr) |
|---|---|---|---|
| Genes up-regulated in F97 and downregulated in F118 upon R. solanacearum infection | |||
| sci_locus_40613_iso_1_len_1495_ver_2 | 3-ketoacyl-CoA thiolase 5, peroxisomal n=2 Arabidopsis thaliana RepID=THIK5_ARATH | -4,18 | 2,42 |
| sci_locus_57525_iso_1_len_447_ver_2 | Lipid binding protein, putative Ricinus communis RepID=B9S7C4_RICCO | -3,09 | 2,47 |
| PGSC0003DMG400006862 | Polygalacturonase | -2,86 | 5,84 |
| PGSC0003DMG400008255 | Conserved gene of unknown function | -2,46 | 3,75 |
| Genes down-regulated in both F97 and F118 accessions upon R. solanacearum infection | |||
| PGSC0003DMG400002519 | Zinc finger protein | -2,32 | -4,86 |
| PGSC0003DMG400020481 | 14 kDa proline-rich protein DC2.15 | -2,67 | -6,35 |
| PGSC0003DMG400023764 | Globulin | -2,35 | -2,95 |
| PGSC0003DMG400002857 | Ribonuclease t2 | -2,35 | -3,43 |
| PGSC0003DMG401019636 | Gene of unknown function | -3,09 | -2,80 |
| PGSC0003DMG400046602 | Conserved gene of unknown function | -2,92 | -6,70 |
| Genes down-regulated in F97 and up-regulated in F118 upon R. solanacearum infection | |||
| PGSC0003DMG400004820 | Electron transporter | 3,31 | -2,03 |
| PGSC0003DMG400029879 | Mechanosensitive ion channel domain-containing protein | 2,34 | -3,46 |
| PGSC0003DMG400030913 | Tuber-specific and sucrose-responsive element binding factor | 2,37 | -3,68 |
| sci_locus_16164_iso_1_len_515_ver_2 | UPI00016437BC related cluster unknown RepID=UPI00016437BC | 2,81 | -3,22 |
log(inoc/ctr) stands for logarithm of FPKM in inoculated divided by FPKM in non-inoculated roots.