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. 2015 Apr 9;10(4):e0123083. doi: 10.1371/journal.pone.0123083

Table 4. Putative target genes of miRNA candidates identified in banana.

miRNA family Target ptotein Function
miR156/157 Squamosa promoter-binding-like protein Transcription factor
OsSPL16—SBP-box gene family member Transcription factor
ELMO/CED-12 family protein Signal transduction
CTP synthase 1 Metabolism
Putative Abscisic acid 8'-hydroxylase 3 Metabolism/Signal transduction
RNA recognition motif containing protein Metabolism
miR159/319 Transcription factor GAMYB Transcription factor
TCP family transcription factor Transcription factor
Chorismate mutase, chloroplastic Metabolism
Putative Nuclear polyadenylated RNA-binding protein 4 Transcription factor
Putative Cysteine-rich receptor-like protein kinase 15 Signal transduction
miR160 Auxin response factor Transcription factor
pentatricopeptide repeat-containing protein At1g68930 Metabolism
miR162 Anthranilate synthase component I-1, chloroplastic Growth development
Nicotianamine synthase 3 Metabolism
miR164 NAC domain-containing protein 21/22 (NAC21/22/NAM/CUC2) Transcription factor
UDP-glucuronic acid decarboxylase 1 Transcriptional regulation
E3 ubiquitin-protein ligase BRE1-like 1 Signal transduction
disease resistance protein, putative, expressed Stress responses
miR166 HD-ZIPⅢ Transcription factor
SRPK4 Transcription factor
Putative 2-oxoglutarate dehydrogenase, mitochondrial Metabolism
pectinacetylesterase domain containing protein, expressed Metabolism
Putative U-box domain-containing protein 33 Signal transduction/protein metabolism
GDSL esterase/lipase At5g33370 Metabolism
miR167 Putative tRNA-specific adenosine deaminase 1 Metabolism
Putative U-box domain-containing protein 52 Signal transduction/protein metabolism
Cytochrome c biogenesis protein CCS1, chloroplastic Metabolism
miR169 Glutamate synthase [NADH], amyloplastic Metabolism
miR172 amine oxidase-related Metabolism
miR397 Laccase Stress response
Putative pectinesterase/pectinesterase inhibitor 28 Metabolism
Putative S-(hydroxymethyl)glutathione dehydrogenase Metabolism/oxidative stress response
Putative Heat shock 70 kDa protein 4L Stress response
cbbY protein-related, putative, expressed Metabolism
miR399 Probable WRKY transcription factor 19 Transcription factor
Putative Zinc finger protein NUTCRACKER Transcription factor
2-oxoglutarate/malate translocator, chloroplastic Transport
DEAD-box ATP-dependent RNA helicase 37 Metabolism
Putative Exportin-2 Transport
miR4995 F-box protein At2g32560 Transcription factor
zinc knuckle domain containing protein Metabolism
Bifunctional aspartokinase/homoserine dehydrogenase 1 Metabolism
miR5538 Dihydroflavonol-4-reductase Metabolism