Table 2.
List of command line programs used in the clustering workflow
| Program name | Source | Use |
|---|---|---|
| sdfSorter.csh | Autocorrelator | sort input records by LE and sort output by cluster index |
| sdfGroovy.csh | Autocorrelator | modify SDF fields and filter records by field contents |
| sdfTagTool.csh | Autocorrelator | copy, rename and delete SDF fields |
| sdfMCSSSphereExclusion.csh | Additional file 3 | select cluster seeds |
| sdfMCSSNNFinder.csh | Additional file 3 | assign cluster members to seeds |
| sdfCluster.pl | Additional file 3 | perform sphere exclusion clustering by calling other tools (cf. Figure 2) |