Table 2.
The features of the mitochondrial genomes of Paramphistomum leydeni (PL) and Paramphistomum cervi (PC)
| Gene | Positions and nt sequence sizes (bp) | Start and stop codons | tRNA Anti-codons | Intergenic nt (bp) | ||||
|---|---|---|---|---|---|---|---|---|
| PL (5’-3’) | PC (5’-3’) | PL | PC | PL | PC | PL | PC | |
| cox3 | 1-645 (645) | 1-645 (645) | ATG/TAG | ATG/TAG | 0 | 0 | ||
| tRNA-His (H) | 647-714 (68) | 647-715 (69) | GTG | GTG | 1 | 3 | ||
| cytb | 717-1829 (1113) | 720-1832 (1113) | ATG/TAG | ATG/TAG | 2 | 4 | ||
| SNCR | 1830-1894 (64) | 1833-1890 (58) | 0 | 0 | ||||
| nad4L | 1895-2158 (264) | 1891-2154 (264) | ATG/TAG | ATG/TAG | 0 | 0 | ||
| nad4 | 2119-3399 (1281) | 2115-3395 (1281) | GTG/TAG | GTG/TAG | −40 | −40 | ||
| tRNA-Gln (Q) | 3404-3469 (66) | 3398-3462 (65) | TTG | TTG | 4 | 2 | ||
| tRNA-Phe (F) | 3501-3567 (67) | 3489-3553 (65) | GAA | GAA | 31 | 26 | ||
| tRNA-Met (M) | 3565-3629 (65) | 3553-3615 (63) | CAT | CAT | −3 | −1 | ||
| atp6 | 3630-4145 (516) | 3616-4131 (516) | ATG/TAG | ATG/TAG | 0 | 0 | ||
| nad2 | 4153-5025 (873) | 4139-5011 (870) | ATA/TAG | GTG/TAG | 7 | 7 | ||
| tRNA-Val (V) | 5049-5112 (64) | 5014-5077 (64) | TAC | TAC | 23 | 2 | ||
| tRNA-Ala (A) | 5122-5187 (66) | 5085-5154 (70) | TGC | TGC | 9 | 7 | ||
| tRNA-Asp (D) | 5197-5266 (70) | 5165-5229 (65) | GTC | GTC | 9 | 10 | ||
| nad1 | 5269-6165 (897) | 5233-6129 (897) | ATG/TAG | ATG/TAG | 2 | 3 | ||
| tRNA-Asn (N) | 6170-6235 (66) | 6142-6207 (66) | GTT | GTT | 4 | 12 | ||
| tRNA-Pro (P) | 6235-6300 (66) | 6208-6270 (63) | TGG | TGG | −1 | 0 | ||
| tRNA-Ile (I) | 6302-6363 (62) | 6272-6334 (63) | GAT | GAT | 1 | 1 | ||
| tRNA-Lys (K) | 6370-6435 (66) | 6344-6409 (66) | CTT | CTT | 6 | 9 | ||
| nad3 | 6436-6792 (357) | 6410-6766 (357) | ATG/TAG | ATG/TAG | 0 | 0 | ||
| tRNA-Ser (S1) | 6810-6868 (59) | 6785-6843 (59) | GCT | GCT | 17 | 18 | ||
| tRNA-Trp (W) | 6878-6941 (64) | 6853-6915 (63) | TCA | TCA | 9 | 9 | ||
| cox1 | 6942-8486 (1545) | 6916-8460 (1545) | ATA/TAG | GTG/TAG | 0 | 0 | ||
| tRNA-Thr (T) | 8500-8561 (62) | 8470-8534 (65) | TGT | TGT | 13 | 9 | ||
| rrnL | 8562-9556 (995) | 8535-9520 (986) | 0 | 0 | ||||
| tRNA-Cys (C) | 9557-9623 (67) | 9527-9586 (60) | GCA | GCA | 0 | 6 | ||
| rrnS | 9624-10372 (749) | 9592-10340 (749) | 0 | 5 | ||||
| cox2 | 10373-10954 (582) | 10341-10919 (579) | ATG/TAG | ATG/TAG | 0 | 0 | ||
| nad6 | 10948-11400 (453) | 10920-11372 (453) | GTG/TAG | GTG/TAG | −7 | 0 | ||
| tRNA-Tyr (Y) | 11420-11485 (66) | 11389-11455 (67) | GTA | GTA | 19 | 16 | ||
| tRNA-Leu (L1) | 11496-11557 (62) | 11470-11536 (67) | TAG | TAG | 10 | 14 | ||
| tRNA-Ser (S2) | 11558-11624 (67) | 11538-11609 (72) | TGA | TGA | 0 | 1 | ||
| tRNA-Leu (L2) | 11644-11708 (65) | 11646-11710 (65) | TAA | TAA | 19 | 36 | ||
| tRNA-Arg (R) | 11709-11775 (67) | 11713-11779 (67) | TCG | TCG | 0 | 2 | ||
| nad5 | 11775-13358 (1584) | 11780-13360 (1581) | GTG/TAA | ATG/TAG | −1 | 0 | ||
| tRNA-Gly (G) | 13359-13431 (73) | 13365-13433 (69) | TCC | TCC | 0 | 4 | ||
| tRNA-Glu (E) | 13440-13507 (68) | 13451-13515 (65) | TTC | TTC | 8 | 17 | ||
| LNCR | 13508-14050 (543) | 13516-14014 (499) | 0 | 0 | ||||
SNCR: Short non-coding region. LNCR: Long non-coding region.
Data of P. cervi (PC) mt genome sequence was derived from Yan et al. (2013) [21] (GenBank accession No. KF_475773).