Table 1.
Data sets analyzed
| GEO accession | Platf | Ref | Description | n | Covariate model | |
|---|---|---|---|---|---|---|
| Ref. Blood | GSE39981 | 27K | [18,52] | Human leukocyte subtypes purified from whole blood samples. | 73 | [whole|gran|mono|B|NK|CD4 + T|CD8 + T|Pan-T] |
| GSE35069 | 450K | [47] | Human leukocyte subtypes purified from whole blood samples. | 54 | [whole|neut|eos|gran|mono|B|NK|CD4 + T|CD8 + T] | |
| Blood | GSE30229* | 27K | [16] | Peripheral blood from 92 head and neck squamous cell carcinoma (HNSCC) patients and 92 controls. | 184 | [control|HNSCC] + age |
| GSE19711 | 27K | [1] | Whole blood from 131 ovarian cancer cases (drawn pre-treatment) and 274 controls. | 405 | [control|ov Cancer] + age | |
| GSE42861 | 450K | [17] | Peripheral blood from 354 rheumatoid arthritis patients and 335 controls. | 689 | [control|arthritis] | |
| Breast Tum | GSE32393 | 27K | [35] | Breast tumor samples: 91 invasive ductal, 13 invasive lobular, 10 mucinous or medullary; 76 were ER+. | 114 | [ER-|ER+] + [duct|lob|muc or med] + age |
| Gastric | GSE30601 | 27K | [53] | 203 gastric tumors and 94 matched gastric non-malignant samples. | 297 | [normal|tumor] |
| Liver | GSE60753 | 450K | [54] | 34 normal liver tissues, 21 cirrhotic tissues (due to alcoholism), 45 cirrhotic tissues [due to chronic hepatitis B (HBV) or C (HCV) viral infection]. | 100 | [normal|CirrEtOH|CirrV] |
| Artery | GSE46394 | 450K | [55] | 15 normal aortic tissues, 15 atherosclerotic lesions, 19 carotid atherosclerotic samples. | 49 | [normal|ath|carotid ath] + [female|male] + age |
* For the HNSCC data, age is not available in the GEO submission GSE30229, but was obtained from the authors of the original study.