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. 2015 Apr 10;10(4):e0123639. doi: 10.1371/journal.pone.0123639

Table 2. Summary of motifs and methyltransferases found in each Salmonella genome.

Serovar Enzyme Assignment Gene Locus_Tag (GenBank) Type Sub- Type Motif Observed Motif Uni-que* % Methyl-ated 5'-3'/3'-5' Number Methyl- ated Motifs (5'-3' strand/ 3'-5' strand) Number Motifs in Genome (5'-3' strand/ 3'-5' strand)
S. Bareilly CFSAN000189 M.SbaUI SEEB0189_17520 III beta CAGm6AG no 97.7 5652 5787
  M.SbaUII SEEB0189_19945 II beta Cm6AGCTG no 88.2 1466 1662
  M.SbaUIII SEEB0189_19740 I gamma CCGm6ANNNNNGTC yes 98.6/ 98.6 482/ 482 489/ 489
  M.SbaUIV SEEB0189_02925 II beta ATGCm6AT no 78.5 1093 1392
  M.SbaUDam SEEB0189_02450 Orphan _ G6mATC no 98.6/ 98.6 37148 37688
S. Abony CFSAN001275 M.SenAboI SEEA0014_11325 III beta CAGm6AG no 96.8 5391 5569
  M.SenAboII SEEA0014_03225 II beta ATGCm6AT no 38 283 744
  M.SenAboIV SEEA0014_08865 I gamma GAm6ACNNNNNNNTTA yes 94.9/ 93.5 410/ 404 432/ 432
  M.SenAboDam SEEA0014_03700 Orphan alpha G6mATC no 95.1/ 95.1 35607 37436
  M1.SenAboIII SEEA0014_08700 I gamma G6mATGNNNNNG4mGC/ G4mCCNNNNNCATC yes 96.1/ 31.0 1260/ 406 1311/ 1311
  M2.SenAboIII SEEA0014_08705 I gamma G6mATGNNNNNG4mGC/ G4mCCNNNNNCATC yes 96.1/ 31.0 1260/ 406 1311/ 1311
S. Anatum CFSAN000665 M.SenAnaI SEEA1592_11695 I gamma CCm6ANNNNNNNNTGAG yes 99.7/ 99.4 354/ 353 355/ 355
  M.SenAnaII SEEA1592_09525 III beta CAGm6AG no 100.0 5509 5511
  M.SenAnaIII SEEA1592_17520 II beta ATGCm6AT no 66.7/ 66.7 674 1010
  M.SenAnaIV SEEA1592_11855 II beta 4mCCWWGG no 83.3/ 83.3 1423 1708
  M.SenAnaDam SEEA1592_01330 Orphan _ G6mATC no 99.8/ 99.8 37140 37224
S. Cubana CFSAN002050 M.Sen2050I CFSAN002050_08375 III beta CAGm6AG no 95.1 6235 6558
  M.Sen2050II CFSAN002050_23900 II beta ATGCm6AT no 45.1/ 45.1 510 1131
  _ _ I _ GGm6ANNNNNNATTA yes 92.7/ 92.3 459/ 457 495/ 495
  _ _ I _ TCm6ANNNNNGTTY yes 95.5/ 92.3 1248/ 1338 1352/ 1352
S. Heidelberg CFSAN002064 M.Sen2064I CFSAN002064_15765 I gamma Gm6AGNNNNNNRTAYG no 97.9/ 97.5 231/ 230 236/ 236
  M.Sen2064II CFSAN002064_18310 III beta CAGm6AG no 98.2 5587 5691
  M.Sen2064III CFSAN002064_10125 II beta ATGCm6AT no 42.4 319 752
  _ _ II _ ACCm6ANCC no 99.4 2703 2719
S. Heidelberg CFSAN002069 M.Sen2069I CFSAN002069_07060 III beta CAGm6AG no 97.9 5816 5939
  M.Sen2069II CFSAN002069_09575 I gamma Gm6AGNNNNNNRTAYG no 97.5/ 97.9 238/ 239 244/ 244
  M.Sen2069III CFSAN002069_15235 II beta ATGCm6AT no 42.2/ 42.2 217 514
  _ _     ACCm6ANCC   99 2747 2774
S. Javiana CFSAN001992 M.SenJI CFSAN001992_09405 III beta CAGm6AG no 97.8 5410 5523
  M.SenJII CFSAN001992_11490 I gamma CCm6AYNNNNNRTANNC yes 98.1/ 97.7 474/ 472 483/ 483
  M.SenJIII CFSAN001992_16620 II beta ATGCm6AT no 58.8/ 58.8 803 1364
  _ _   G6mATC no 98.9/ 98.9 36330 36738
S. Montevideo CFSAN000255 M.Sen255I Y007_00590 III beta CAGm6AG no 99.4 5504 5535
  M.Sen255II Y007_12075 II beta ATGCm6AT no 50.0/ 50.0 387 774
  _ _ I _ CG6mAYNNNNNNNRTRTC yes 99.1/ 98.9 439/ 438 443/ 443
  _ _ II alpha G6mATC no 99.1/ 99.1 36866 37204
  _ _ I _ GCm6ANNNNNNCTGA no 98.6/ 99.5 554/ 559 562/ 562
S. Enteriditis CSFAN000111 M.Sen1427II SEEE1427_7355 I gamma CGm6ANNNNNNTRCC no 98.4/ 97.9 1721/ 1712 1749/ 1749
  _ _ II   G6mATC no 98.8/ 98.8 36824 37256
  M.Sen1427I SEEE1427_9465     CAGm6AG no 99.2 5505 5549
  M.Sen1427III       ATGC6mAT no 43 315 732
S. Enteriditis CFSAN000158 M.Sen158I SEEE0968_18850 III beta CAGm6AG no 98.1 5490 5599
  M.Sen158II SEEE0968_20955 I gamma CGm6ANNNNNNTRCC no 99.0/ 98.0 1739/ 1722 1757/ 1757
  M.Sen158III SEEE0968_03950 II beta ATGC6mAT  no 41.3/ 41.3 302 732
S. Typhimurium CFSAN001921 M.SenTFI CFSAN001921_15255 III beta CAGm6AG no 89.3 5635 6308
  M.SenTFII CFSAN001921_17800 I gamma CRTm6AYNNNNNNCTC no 90.7/ 89.1 233/ 229 257/ 257
  M.SenTFIII CFSAN001921_00055 II beta ATGCm6AT no 60.9 630 1035
  SenTFIV CFSAN001921_17955 II alpha GATC6mAG no 94.3 2841 3011

*A unique motif refers to one that has not been previously observed in any bacterial species.