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. 2015 Mar 29;2015:626975. doi: 10.1155/2015/626975

Table 2.

The 43 morphological characteristics extracted by L-measure software and their descriptions.

Number Abbr. Morphological index Description
1 SS Soma_surface Somatic surface area
2 N s N_stems Total number of trees
3 N bi N_bifs Total number of bifurcations
4 N br N_branch Number of bifurcations plus terminations
5 N t N_tips Number of terminal tips of a neuron
6 NW Neuronal_width 95% of second principal component
7 NH Neuronal_height 95% of first principal component
8 ND Neuronal_depth 95% of third principal component
9 Ty Type Compartments are assigned to four different types: 1 = soma, 2 = axon, 3 = dendrites, and 4 = apical dendrites
10 Di Diameter Average branch diameter
11 Dp Diameter_pow Diameter of each compartment of the neuron raised to the power of 1.5
12 Le Length Total arborization length
13 Su Surface Surface area of each compartment
14 SA Section area Total arborization surface area
15 Vo Volume Total internal volume of the arborization
16 ED Euc distance Maximum euclidean (straight) distance from soma to tips
17 PD Path distance Maximum path (along the tree) distance from soma to tips
18 BO Branch_order Maximum branch order number of bifurcations from soma to tips
19 Td Terminal degree Total number of tips each segment will terminate into
20 TS Terminal segment Number of compartments that comprise the terminal branch
21 Ta1 Taper_1 The change in diameter over path length between two critical points
22 Ta2 Taper_2 The ratio of the change in diameter to the initial diameter of two critical points. The initial diameter is usually larger
23 Bpl Branch_path length Summation of the individual compartment lengths that form a branch
24 Co Contraction Average contraction (the ratio between euclidean and path length calculated on each branch)
25 Fr Fragmentation Total number of reconstruction points
26 DR Daughter_ratio Ratio between the diameter of the bigger daughter and the smaller daughter of the current bifurcation
27 PDR Parent-daughter_ratio Ratio between the diameter of a daughter and its father for each critical point
28 Pa Partition_asymmetry Average over all bifurcations of the absolute value of (n1 − n2)/(n1 + n2 − 2), where n1 and n2 are the numbers of tips in the two subtrees
29 RP Rall_power Average over all bifurcations of the sum of the diameters of the two daughters, elevated to 1.5, divided by the diameter of the parent, and elevated to 1.5
30 Pk Pk n = [0, 5]
31 Pc Pk_classic Rall power is set to 1.5
32 Pk2 Pk_2 Rall power is set to 2
33 Bal Bif_ampl_local Average over all bifurcations of the angle between the first two daughter compartments
34 Bar Bif_ampl_remote Average over all bifurcations of the angle between the following bifurcations or tips
35 Btl Bif_tilt_local The angles between the end of the parent branch and the initial part of the daughter branches at the bifurcation
36 Btr Bif_tilt_remote The angles between the previous node of the current bifurcating father and the daughter nodes
37 Btol Bif_torque_local Angle between the current plane of bifurcation and the previous plane of bifurcation
38 Btor Bif_torque_remote Angle between the current plane of bifurcation and the previous plane of bifurcation
39 Lpd Last_parent_diam Diameter of last bifurcation before the terminal tips
40 Dt Diam_threshold Diameter of first compartment after the terminal bifurcation leading to a terminal tip
41 HT Hillman threshold Computation of the weighted average diameter between 50% of father and 25% of daughter diameters of the terminal bifurcation
42 He Helix Helicity of the branches of the neuronal tree. It needs to be at least 3 compartments long to compute the helicity
43 FD Fractal_dim Fractal dimension metric of the branches in the dendrite trees