Table 1.
Data collection and refinement statistics
Construct: | Nrp2-VEGF-C | Nrp2-T319R | s9Nrp2B |
---|---|---|---|
Data Collection | |||
Beamline | APS 22-ID | APS 22-BM | APS 22-ID |
Wavelength | 1.0000 | 1.0000 | 1.0000 |
Space group | P21 | P212121 | P21212 |
Cell dimensions (Å) | 41.05, 120.81, 69.84 | 34.90, 70.76, 122.97 | 69.36, 91.39, 67.33 |
Cell dimensions (°) | 90.0, 103.29, 90.0 | 90.0, 90.0, 90.0 | 90.0, 90.0, 90.0 |
Unique reflections | 44,081 | 12,223 | 16,303 |
Completeness (%) | 90.6(82.0) | 96.4(83.2) | 94.1(79.8) |
Resolution (Å) | 1.95(2.02–1.95) | 2.40(2.49–2.40) | 2.40(2.49–2.40) |
Rmerge (%) | 9.9(46.6) | 8.0(29.2) | 9.9(32.7) |
Redundancy | 5.1(4.2) | 6.8(5.9) | 4.4(4.1) |
I/σ(I) | 13.1(3.0) | 29.4(5.1) | 12.3(3.2) |
Refinement | |||
Resolution limits (Å) | 20.00(1.95) | 20.00(2.40) | 20.00(2.40) |
No. reflections/no. to compute Rfree | 41,511/2140 | 11,490/586 | 15,439/821 |
R(Rfree) | 21.0(24.1) | 20.1(25.5) | 21.0(26.4) |
No. protein residues | 632 | 313 | 361 |
No. solvent/ion molecules | 333 | 123 | 107 |
RMSD Bond, Å | 0.006 | 0.008 | 0.006 |
RMSD Angle, ° | 1.11 | 1.19 | 1.04 |
Protein geometry | |||
Ramachandran outlier/favored (%) | 0/96.7 | 0/96.1 | 0/96.7 |
Residues with bad bonds/angles | 0/0 | 0/0 | 0/0 |
Rotamer outliers | 0 | 0 | 0 |