Table 1.
Expression Datasets Used for the Study, for Both the TFG and the PPI Subnetworks
| Dataset | Technique | GSE ID | Number of samples | Full-size expression profile (number of genes) | Test expression profile (number of genes) | CV optimized expression profile (number of genes) |
|---|---|---|---|---|---|---|
| Eppert | Microarray | GSE30377 | 93 | 12,495 | 1208 | 3663 |
| Metzeler | Microarray | GSE12417 | 163 | 12,495 | 1208 | 4535 |
| Valk | Microarray | GSE1159 | 293 | 12,496 | 1208 | 3388 |
| Macrae | RNA-seq | GSE49642 | 43 | 11,737 | 785 | 3154 |
| TCGA | RNA-seq | NA | 179 | 12,917 | 881 | 4332 |
Three microarray and one RNA-seq datasets were downloaded from GEO. The TCGA RNA-seq LAML dataset was downloaded from the TCGA Data Portal.