Table 2.
Exons and introns distribution across human coding genes. Human genome data was downloaded from the UCSC main table browser (GCRh38, December 2013 build). Data was processed using tabular software. Analysis was performed using 26,177 coding genes, containing 278,420 exons and 252,243 introns. See the caution in Table 1 for the shortest introns (<30–40 nt).
Chr # | Total # Genes | Total # Exons | Total # Introns | Max # Exons/Gene | Chromosome Size (bp) | Avg # of Exons/Gene | Avg Length (bp) ± Std Dev | Total Length (bp) | Shortest (bp) | Longest (bp) | Genes/Millions | Intronless Genes | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Exon | Intron | Exon | Intron | Exon | Intron | Gene | Exon | Intron | Gene | |||||||||
1 | 2729 | 28,554 | 25,825 | 138 | 248,956,422 | 10.5 | 307 ± 702 | 5136 ± 15,685 | 8,778,766 | 132,633,451 | 3 | 1 | 270 | 12,573 | 451,448 | 1,491,100 | 11.0 | 149 |
2 | 1653 | 22,244 | 20,591 | 363 | 242,193,529 | 13.5 | 294 ± 723 | 6283 ± 20,404 | 6,534,873 | 128,437,100 | 1 | 37 | 582 | 17,969 | 866,400 | 1,900,275 | 6.8 | 35 |
3 | 1448 | 16,336 | 14,888 | 118 | 198,295,559 | 11.3 | 312 ± 765 | 7535 ± 24,995 | 5,098,251 | 5,098,251 | 3 | 3 | 294 | 24,927 | 24,927 | 1,502,150 | 7.3 | 44 |
4 | 989 | 9991 | 9002 | 84 | 190,214,555 | 10.1 | 338 ± 729 | 8471 ± 25,955 | 3,372,765 | 76,252,775 | 8 | 1 | 576 | 9856 | 912,253 | 1,474,687 | 5.2 | 107 |
5 | 1103 | 11,709 | 10,606 | 90 | 181,538,259 | 10.6 | 337 ± 785 | 7240 ± 22,309 | 3,944,829 | 76,788,283 | 6 | 21 | 530 | 22,753 | 772,519 | 1,519,058 | 6.1 | 85 |
6 | 1432 | 14,660 | 13,228 | 146 | 170,805,979 | 10.2 | 317 ± 713 | 6665 ± 19,530 | 4,653,325 | 88,160,529 | 6 | 1 | 354 | 15,177 | 478,750 | 1,987,246 | 8.4 | 109 |
7 | 1189 | 13,187 | 11,998 | 108 | 159,345,973 | 11.1 | 306 ± 744 | 7897 ± 24,804 | 4,032,145 | 94,745,609 | 2 | 1 | 600 | 14,889 | 657,297 | 2,304,636 | 7.5 | 55 |
8 | 869 | 8779 | 7910 | 86 | 145,138,636 | 10.1 | 327 ± 768 | 7942 ± 24,970 | 2,871,568 | 62,820,216 | 5 | 12 | 663 | 15,980 | 955,098 | 2,059,454 | 6.0 | 26 |
9 | 1041 | 11,352 | 10,311 | 98 | 138,394,717 | 10.9 | 304 ± 703 | 5971 ± 16,684 | 3,453,046 | 61,566,944 | 3 | 5 | 411 | 10,345 | 344,501 | 2,298,478 | 7.5 | 73 |
10 | 978 | 11,096 | 10,118 | 68 | 133,797,422 | 11.3 | 310 ± 715 | 7926 ± 24,491 | 3,440,785 | 80,199,711 | 5 | 67 | 563 | 11,090 | 482,575 | 1,783,674 | 7.3 | 26 |
11 | 1703 | 16,196 | 14,493 | 90 | 135,086,622 | 9.5 | 301 ± 665 | 5136 ± 19,917 | 4,880,180 | 74,431,941 | 2 | 1 | 484 | 18,173 | 811,152 | 1,468,409 | 12.6 | 211 |
12 | 1407 | 16,186 | 14,779 | 173 | 133,275,309 | 11.5 | 294 ± 688 | 4939 ± 15,284 | 4,757,204 | 72,993,897 | 9 | 5 | 396 | 14,194 | 403,400 | 1,249,864 | 10.6 | 50 |
13 | 426 | 4920 | 4494 | 83 | 114,364,328 | 11.5 | 330 ± 864 | 8615 ± 29,149 | 1,624,165 | 38,717,496 | 5 | 66 | 1310 | 21,022 | 740,920 | 1,468,616 | 3.7 | 10 |
14 | 832 | 8745 | 7913 | 116 | 107,043,718 | 10.5 | 319 ± 741 | 6107 ± 20,447 | 2,786,125 | 48,327,558 | 4 | 14 | 465 | 17,546 | 479,079 | 1,464,560 | 7.8 | 38 |
15 | 769 | 9686 | 8917 | 104 | 101,991,189 | 12.6 | 299 ± 689 | 5508 ± 16,227 | 2,900,248 | 49,116,901 | 8 | 21 | 918 | 10,227 | 550,366 | 887,042 | 7.5 | 23 |
16 | 1117 | 11,738 | 10,621 | 63 | 90,338,345 | 10.5 | 281 ± 607 | 3831 ± 17,251 | 3,296,823 | 40,686,903 | 5 | 1 | 397 | 10,024 | 778,855 | 1,694,208 | 12.4 | 20 |
17 | 1619 | 17,644 | 16,025 | 85 | 83,257,441 | 10.9 | 280 ± 605 | 3427 ± 13,031 | 4,943,096 | 54,914,295 | 8 | 1 | 445 | 9719 | 1,043,910 | 1,143,719 | 19.4 | 68 |
18 | 364 | 4082 | 3718 | 75 | 80,373,285 | 11.2 | 360 ± 872 | 10,356 ± 24,257 | 1,469,520 | 38,504,335 | 9 | 75 | 906 | 14,862 | 411,175 | 1,195,732 | 4.5 | 17 |
19 | 1904 | 16,757 | 14,853 | 106 | 58,617,616 | 8.8 | 296 ± 659 | 2283 ± 5233 | 4,964,098 | 33,906,702 | 6 | 2 | 541 | 21,693 | 121,730 | 301,152 | 32.5 | 54 |
20 | 741 | 7114 | 6373 | 80 | 64,444,167 | 9.6 | 307 ± 669 | 5564 ± 18,912 | 2,180,506 | 35,459,411 | 11 | 66 | 666 | 10,441 | 544,980 | 2,057,697 | 11.5 | 23 |
21 | 311 | 3183 | 2872 | 47 | 46,709,983 | 10.2 | 292 ± 700 | 5831 ± 16,574 | 930,502 | 16,745,676 | 9 | 9 | 147 | 11,938 | 323,564 | 834,698 | 6.7 | 54 |
22 | 598 | 6190 | 5592 | 55 | 50,818,468 | 10.4 | 300 ± 702 | 4156 ± 11,646 | 1,857,403 | 23,242,726 | 8 | 1 | 686 | 12,955 | 322,908 | 701,852 | 11.8 | 14 |
X | 854 | 7222 | 6368 | 84 | 156,040,895 | 8.5 | 344 ± 774 | 6428 ± 22,011 | 2,483,142 | 40,934,557 | 10 | 67 | 501 | 10,363 | 536,479 | 1,368,337 | 5.5 | 79 |
Y | 101 | 849 | 748 | 46 | 57,227,415 | 8.4 | 267 ± 576 | 9483 ± 32,196 | 226,383 | 5,888,994 | 24 | 67 | 737 | 8690 | 493,512 | 686,139 | 1.8 | 9 |