Table 4.
Result of TaqMan copy number assays
| Chr | Start | End | Probe ID | CNV genotype a | TP | FP | PPV b |
|---|---|---|---|---|---|---|---|
| Chr1 | 112490851 | 112509390 | Hs_03201731_cn | 0, 1, 2 | 179 | 9 | 0.95 |
| Chr8 | 9535412 | 9536779 | Hs_04345744_cn | 0, 1, 2 | 73 | 1 | 0.99 |
| Chr9 | 71952096 | 71953157 | Hs_06899364_cn | 1, 2 | 58 | 1 | 0.98 |
| Chr11 | 85981796 | 85983048 | Hs_03777027_cn | 0, 1, 2 | 70 | 4 | 0.95 |
| Chr13 | 36971042 | 36976531 | CCT956B | 0, 1, 2 | 85 | 3 | 0.97 |
| Chr17 | 47477132 | 47478158 | CCD1TXG | 0, 1, 2 | 86 | 0 | 1.00 |
aDesignations for the CNV genotype are as indicated in the Methods. bPPV: positive predictive value, PPV is defined as number of TPs/(number of TPs + number of FPs).