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. Author manuscript; available in PMC: 2015 Apr 14.
Published in final edited form as: Biochemistry. 2010 Jul 27;49(29):6136–6142. doi: 10.1021/bi100540k

Table 2.

Solvation Free Energy Contribution (kcal/mol) of Alcohols and Water Binding to Wild-Type LUSH Proteina

butanol propanol ethanol water
B3LYP/B1
 protein −27.93 −27.93 −27.93 −27.93
 ligand −3.72 −3.88 −4.30 −8.27
 complex −27.83 −27.85 −27.51 −28.27
C – (P + L)b 3.82 3.96 4.73 7.93
B3LYP/B2//B3LYP/B1
 protein −29.25 −29.25 −29.25 −29.25
 ligand −4.43 −4.65 −5.18 −8.82
 complex −29.06 −29.32 −28.82 −29.62
C – (P + L)b 4.62 4.58 5.62 8.45
M05-2X/B1
 protein −30.00 −30.00 −30.00 −30.00
 ligand −4.26 −4.46 −4.91 −8.90
 complex −29.17 −29.77 −29.29 −29.34
C – (P + L)b 5.09 4.69 5.62 9.55
M05-2X/B2//M05-2X/B1
 protein −31.44 −31.44 −31.44 −31.44
 ligand −4.86 −5.09 −5.67 −9.23
 complex −30.49 −31.24 −30.71 −30.63
C – (P + L)b 5.82 5.29 6.41 10.05
a

SMD solvation model calculations on the gas-phase optimized geometries. B1 = 6-31G(d), and B2 = 6-31+G(d,p). A negative value indicates stabilization due to solvation.

b

Computed as complex – (protein + ligand).