Table 4. The ratio of the expression levels of 12 DGEs of 7 day old Ggt-infected wheat roots to Ggt 5 days in culture as determined by qRT-PCR versus RPKM values from RNA-seq.
| DEG number | qRT-PCR 1 | RPKM 2 |
|---|---|---|
| GGTG_06356 | 1.30 | 1.91 |
| GGTG_10325 | 4.06 | 3.64 |
| GGTG_03068 | 1.31 | 1.98 |
| GGTG_03357 | 1.45 | 2.04 |
| GGTG_11051 | 1.22 | 1.24 |
| GGTG_01138 | 3.92 | 3.06 |
| GGTG_03287 | 9.31 | 8.52 |
| GGTG_02124 | 5.65 | 4.20 |
| GGTG_02417 | 0.08 | 0.09 |
| GGTG_05722 | 4.11 | 4.62 |
| GGTG_02686 | 4.45 | 4.80 |
| GGTG_09200 | 5.87 | 5.31 |
1 qRT-PCR ratio was determined from the log2 of the− ΔΔ CT values from the Ggt-infected wheat root sample divided by that from the Ggt in culture
2 RPKM ratio determined by the log2 of the RPKM value from the Ggt-infected wheat roots divided by that of the Ggt culture sample.