Table 1. GO category analysis of 1 hour shade-responsive genes in leaf/apical region.

category	Term	over_represented_pvalue	over_represented_padjust value
GO:0009733	response to auxin stimulus	2.70e-41	6.70e-38
GO:0010583	response to cyclopentenone	7.49e-07	6.61e-04
GO:0009753	response to jasmonic acid stimulus	8.00e-07	6.61e-04
GO:0009641	shade avoidance	3.03e-06	1.88e-03
GO:0009630	gravitropism	5.48e-06	2.72e-03
GO:0009741	response to brassinosteroid stimulus	7.92e-06	3.27e-03

Plants were grown on soil under simulated sun (R/FR = 1.9) and long-day (16/8 hours) conditions for two weeks and then were transferred to simulated shade (R/FR = 0.5) or left in the sun condition. Above-ground parts excluding hypocotyl were collected at 1 hour shade treatment in leaf. Terms with adjusted p-value by Benjamini & Hochberg method [135] <0.01 were selected from GOseq analysis.