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. 2015 Apr 15;11(4):e1004953. doi: 10.1371/journal.pgen.1004953

Table 3. Over-representation analysis of shade-responsive genes and hormone responsive genes.

1 hour shade treatment 4 hour shade treatment
regulated by hormone UP DOWN UP DOWN
IAA UP 4.59e-75 1 1.2e-06 0.138
IAA DOWN 1 0.0642 0.152 1
BR UP 0.000269 1 1 1
BR DOWN 1.04e-10 1 0.00355 1
GA UP 1 1 1 1
GA DOWN 0.00148 1 1 1
JA UP 0.0083 0 8.34e-18 0.0567
JA DOWN 1.9e-12 1 0.000406 1
CK UP 0.00259 1 1 1
CK DOWN 1 1 1 1
ABA UP 0.0258 0.431 1.31e-07 1
ABA DOWN 0.00141 0.252 0.0064 1
ACC UP 1.58e-05 1 0.000106 1

p-values were calculated by GOseq [129] and adjusted by Benjamini & Hochberg correction [135].