Table 4. GO category analysis of 1 hour shade-responsive genes in hypocotyl.

category	Term	over_represented_pvalue
GO:0009719	response to endogenous stimulus	1.72e-38
GO:0010033	response to organic substance	1.46e-32
GO:0009725	response to hormone stimulus	9.18e-32
GO:0009733	response to auxin stimulus	6.02e-28
GO:0042221	response to chemical stimulus	3.04e-24
GO:0050896	response to stimulus	1.23e-17
GO:0009741	response to brassinosteroid stimulus	5.38e-16
GO:1901700	response to oxygen-containing compound	2.03e-12
GO:0033993	response to lipid	7.38e-10
GO:0097305	response to alcohol	1.25e-09
GO:0009639	response to red or far red light	2.94e-09
GO:0014070	response to organic cyclic compound	4.45e-09
GO:0065007	biological regulation	1.62e-08
GO:0009612	response to mechanical stimulus	2.55e-08
GO:0009641	shade avoidance	5.70e-08
GO:0010200	response to chitin	2.78e-07
GO:0010243	response to organic nitrogen	4.77e-07
GO:0009416	response to light stimulus	8.17e-07
GO:0009314	response to radiation	2.87e-06
GO:0009628	response to abiotic stimulus	4.51e-06

Same as Table 1 except 1 hour shade treatment in hypocotyl instead of 1 hour shade treatment in leaf. Expression data is from [7]. Terms with p-value<1e-5 were selected from amiGO analysis.