Table 4.
Transcriptomic and proteomic results for conserved hypothetical proteins, specifically expressed in response to ionizing radiation
| Accession number | Gene | Protein function | COG | RNA fold change 3200 Gy | RNA fold change 5000 Gy | Protein fold change 3200 Gy | Protein fold change 5000 Gy |
|---|---|---|---|---|---|---|---|
| ARTHROv5_10472 | arhA | Putative ABC-type phosphate transport system, periplasmic component, PstS-like | P | 14.58 | 9.24 | ND | ND |
| ARTHROv5_10471 | arhB | Conserved protein of unknown function | D | NS | 22.35 | 1.75 | NS |
| ARTHROv5_10470 | arhC | Conserved protein of unknown function (conserved domain involved in chromosome segregation) | L | 3.13 | 14.62 | 1.40 | NS |
| ARTHROv5_10469 | arhD | Conserved hypothetical protein | – | 5.43 | 9.46 | ND | ND |
| ARTHROv5_10468 | arhE | Conserved protein of unknown function | – | 9.58 | 11.98 | 7.12 | 4.30 |
| ARTHROv5_10467 | arhF | Conserved hypothetical protein | – | 5.10 | 5.75 | ND | ND |
| ARTHROv5_10466 | arhG | Transcriptional regulator, XRE family | K | 2.55 | 2.78 | ND | ND |
The fold change (FC) values listed are values for which P < 0.05, and are only considered biologically significant if FC > 2 or <0.5 for microarray data, FC > 1.25 or <0.8 for proteomics data. “NS” stands for statistically not significant differentially expressed (P ≥ 0.05) as RNA or as protein. “ND” stands for not detected as protein. Bold are genes of which the proteins were also detected in Proteomics.