Table 2.
List of abundant small non-coding RNAs
| Fractions | Gene product | No. of reads1 | Most abundant read (raw counts2) | Rank3 |
|---|---|---|---|---|
| OMV RNA | tmRNA 105a RNA (ssrA) | 452 | GGGGCTGATTCTGGATTCGACGGG (108) | 124 |
| 4.5S sRNA component of Signal Recognition Particle (ffs) | 373 | GGGGGCTCTGTTGGTTCTCCCGCAACGCT (82) | 95 | |
| 6S RNA inhibits RNA polymerase promoter binding (ssrS) | 361 | CATCTCGGAGATTCCC (52) | 47 | |
| OMV-free RNA | 4.5S sRNA component of Signal Recognition Particle (ffs) | 10,743 | GGGGGCTCTGTTGGTTCTCCCGCAACGCT (1383) | 95 |
| Novel sRNA (ryeA) | 405 | CAAGAGCCATTTCCCTGGACCG (103) | 40 | |
| tmRNA 105a RNA (ssrA) | 391 | GGGGCTGATTCTGGATTCGACGGGA (87) | 124 | |
| Novel sRNA (ryfD) | 369 | AAGACGATCCGGTACGC (108) | 54 | |
| 6S RNA inhibits RNA polymerase promoter binding (ssrS) | 244 | TTTCTCTGAGATGTTCGCAAGC (19) | 47 | |
| sRNA antisense regulator of gadAB transcriptional activator GadX mRNA (gadY) | 230 | TCTGGAGACGGCAGACT (104) | 100 | |
| sRNA antisense regulator represses oppA, dppA, gltI and livJ expression (ryeB) | 124 | AGAGAGCCGTGCGCTAAAAGT (61) | 72 | |
| Intracellular RNA | Novel sRNA(ryeA) | 4907 | AGAGAGCCGTGCGCTAAAAGT (477) | 1 |
| sRNA antisense regulator blocking mokB (sokB) | 4730 | ATTCGTTGGCCTCGGTTGA (3580) | 2 | |
| sRNA antisense regulator affects LdrB translation (rdlB) | 4413 | GTCAGGTTTTACCTCTCAACGTGCGGGGGTTTTCTC (2180) | 3 | |
| 6S RNA inhibits RNA polymerase promoter binding (ssrS) | 4050 | TTTCTCTGAGATGTTCGCAAGCGGGCCAGTCC (287) | 4 | |
| Novel sRNA (ryfD) | 2575 | GGAGGAGTTATGCGTCTGGATCGTCTTACT (536) | 5 | |
| sRNA antisense regulator of OM chitoporin (chiX) | 2396 | TCTTTGACGGGCCAATAGCGATATTGGCCATTTTTTT (413) | 6 |
1
Total number of reads mapped to the genomic region.
2
Coverage of individual reads.
3
Ranks provided for small non-coding RNAs derived from RNAexMOV and RNAexMOV-f are ranked according to their abundance in RNAint.