Table 2.
Gene copy numbers across 33 gene families related to wood degradation, and CBM1 copies found across 13 Agaricales genomes and P. crispa. Absence of gene copies for a gene family is highlighted in grey. For an explanation of the species acronyms, see the materials and methods.
| Fishe | Schco | Cylto | Gymlu | Ompol | Armme | Galma | Hypsu | Pleos | Plicr | Copci | Agabi | Amath | Volvo | total copies | average number of copies | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| POD | 0 | 0 | 0 | 5 | 5 | 10 | 23 | 14 | 9 | 7 | 1 | 2 | 0 | 7 | 83 | 6 |
| DyP | 0 | 0 | 0 | 12 | 1 | 4 | 5 | 2 | 4 | 0 | 4 | 0 | 1 | 3 | 36 | 3 |
| HTP | 3 | 3 | 5 | 19 | 8 | 6 | 24 | 13 | 4 | 3 | 8 | 24 | 4 | 3 | 127 | 9 |
| Lac | 3 | 2 | 3 | 16 | 6 | 23 | 8 | 12 | 11 | 5 | 17 | 12 | 15 | 11 | 144 | 10 |
| GLX | 0 | 0 | 0 | 5 | 2 | 0 | 4 | 3 | 4 | 0 | 0 | 3 | 2 | 0 | 23 | 2 |
| CDH | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 16 | 1 |
| total oxidative enzymes per species | 7 | 6 | 10 | 58 | 23 | 45 | 65 | 45 | 33 | 16 | 31 | 42 | 23 | 25 | 429 | 31 |
| GH6 | 0 | 1 | 3 | 1 | 1 | 2 | 3 | 1 | 3 | 2 | 5 | 1 | 1 | 5 | 29 | 2 |
| GH7 | 4 | 2 | 5 | 7 | 4 | 4 | 8 | 4 | 16 | 1 | 6 | 1 | 1 | 11 | 74 | 5 |
| LPMO | 10 | 22 | 26 | 13 | 7 | 19 | 19 | 14 | 29 | 9 | 35 | 11 | 16 | 28 | 258 | 18 |
| GH10 | 2 | 5 | 3 | 5 | 4 | 6 | 8 | 7 | 3 | 2 | 5 | 2 | 4 | 18 | 74 | 5 |
| GH11 | 0 | 1 | 1 | 4 | 0 | 2 | 8 | 2 | 2 | 0 | 6 | 2 | 0 | 0 | 28 | 2 |
| GH12 | 2 | 1 | 4 | 3 | 1 | 3 | 4 | 1 | 2 | 2 | 1 | 2 | 3 | 2 | 31 | 2 |
| GH5_5 | 1 | 2 | 3 | 4 | 4 | 1 | 7 | 6 | 4 | 2 | 1 | 3 | 3 | 1 | 42 | 3 |
| GH5_7 | 0 | 1 | 1 | 5 | 2 | 3 | 7 | 2 | 4 | 2 | 3 | 1 | 1 | 1 | 33 | 2 |
| GH28 | 6 | 3 | 9 | 19 | 7 | 21 | 19 | 7 | 6 | 10 | 3 | 5 | 5 | 3 | 123 | 9 |
| GH74 | 0 | 1 | 2 | 1 | 1 | 2 | 2 | 1 | 3 | 1 | 1 | 1 | 1 | 1 | 18 | 1 |
| GH45 | 1 | 1 | 2 | 2 | 2 | 3 | 2 | 1 | 2 | 1 | 0 | 1 | 2 | 1 | 21 | 2 |
| total bulk CAZY per species | 26 | 40 | 59 | 64 | 33 | 66 | 87 | 46 | 74 | 32 | 66 | 30 | 37 | 71 | 731 | 52 |
| GH1 | 1 | 3 | 1 | 3 | 3 | 8 | 5 | 3 | 3 | 3 | 2 | 1 | 3 | 3 | 42 | 3 |
| GH2 | 1 | 4 | 3 | 4 | 4 | 2 | 3 | 3 | 3 | 5 | 2 | 2 | 2 | 2 | 40 | 3 |
| GH3 | 14 | 12 | 7 | 17 | 10 | 13 | 11 | 9 | 11 | 10 | 7 | 7 | 10 | 9 | 147 | 11 |
| GH27 | 4 | 1 | 9 | 6 | 3 | 6 | 8 | 6 | 7 | 2 | 0 | 4 | 4 | 2 | 62 | 4 |
| GH29 | 1 | 2 | 0 | 1 | 1 | 3 | 1 | 0 | 0 | 1 | 0 | 1 | 1 | 0 | 12 | 1 |
| GH35 | 3 | 4 | 2 | 5 | 5 | 8 | 10 | 4 | 5 | 2 | 0 | 1 | 4 | 4 | 57 | 4 |
| GH43 | 2 | 19 | 19 | 11 | 3 | 7 | 6 | 3 | 8 | 3 | 4 | 3 | 6 | 14 | 108 | 8 |
| GH51 | 1 | 2 | 2 | 5 | 2 | 3 | 5 | 2 | 3 | 2 | 1 | 1 | 1 | 3 | 33 | 2 |
| GH95 | 1 | 2 | 2 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 0 | 1 | 1 | 1 | 17 | 1 |
| GH115 | 4 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 3 | 3 | 23 | 2 |
| CE1 | 0 | 11 | 6 | 5 | 3 | 1 | 2 | 3 | 2 | 4 | 3 | 1 | 1 | 4 | 46 | 3 |
| CE5 | 0 | 2 | 2 | 3 | 0 | 0 | 6 | 2 | 0 | 0 | 6 | 6 | 2 | 1 | 30 | 2 |
| CE8 | 2 | 2 | 3 | 6 | 3 | 8 | 3 | 4 | 2 | 3 | 0 | 2 | 2 | 3 | 43 | 3 |
| CE12 | 0 | 2 | 5 | 3 | 1 | 1 | 4 | 3 | 2 | 0 | 1 | 2 | 3 | 1 | 28 | 2 |
| CE15 | 0 | 2 | 1 | 2 | 1 | 4 | 1 | 2 | 1 | 1 | 8 | 1 | 1 | 1 | 26 | 2 |
| CE16 | 7 | 11 | 12 | 13 | 4 | 11 | 10 | 7 | 10 | 11 | 5 | 11 | 4 | 7 | 123 | 9 |
| total accessory CAZY per species | 41 | 81 | 75 | 86 | 45 | 77 | 78 | 53 | 59 | 50 | 40 | 46 | 48 | 58 | 837 | 60 |
| toal copies per species | 74 | 127 | 144 | 208 | 101 | 188 | 230 | 144 | 166 | 98 | 137 | 118 | 108 | 154 | 1997 | 143 |
| CBM1 | 0 | 5 | 0 | 32 | 15 | 10 | 51 | 28 | 31 | 15 | 44 | 13 | 10 | 51 | 305 | 22 |
*
Only complete CDH (containing both the GMC and cytochrome domains) genes are reported.