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. 2015 Apr 16;10(4):e0124783. doi: 10.1371/journal.pone.0124783

Table 1. Single-Turnover DNA Cleavage Rate Constants (kobs) using 1 μM SgrAI dimer.

32P-labeled Reporter DNA (1 nM) Added Unlabeled Activator DNA kobs a (min-1) a Percent Cleaved a , b Relative Acceleration c
18–1 0 nM PC d 0.094±0.015 - -
10 nM PC d 0.18±0.06 - 2
100 nM PC d 0.30±0.03 - 3
250 nM PC 12.6±0.8 74±4 130
500 nM PC 27±7 90±10 300
1000 nM PC d 22±7 - 230
1000 nM 22–1 e 1.1±0.4 12
1000 nM 22-1-3’S 1.47±0.12 - 16
40–1 0 nM PC 0.236±0.006 68±1 -
10 nM PC 0.37±0.01 71±1 1.5
100 nM PC 4.4±0.4 69±2 20
250 nM PC 11.0±0.3 71.6±0.4 50
500 nM PC 18.0±0.3 75.8±0.2 80
1 μM PC 16.3±1.7 76.3±0.4 70
2 μM PC 23±2 73.0±0.8 98
40–1 1 nM 40–1 0.28±0.02 63±2 -
1 μM 40–1 12±1 29±3 40
40-2A 0 nM PC 0.013±0.004 17.7±0.5 -
10 nM PC 0.018±0.004 70±7 1
100 nM PC 0.039±0.005 63±2 3
250 nM PC 0.82±0.09 28±2 60
500 nM PC 6.1±0.6 53±1 500
1 μM PC 9±3 53±7 700
2 μM PC 10±3 38±3 800
40-2A 1 nM 40-2A 0.004±0.003 34±12 -
1 μM 40-2A 0.25±0.06 78±5 20
40-2B 100 nM PC 0.0221±0.0009 54±3 2 f
250 nM PC 1.23±0.07 20±4 100 f
500 nM PC 2.2±0.4 29±2 170 f
1 μM PC 8.1±1.4 33±2 600 f
2 μM PC 11.8±1.4 45±2 900 f
40-2B-Top 0 nM PC 0.0129±0.0004 69.7±0.2 -
1 μM PC 9.3±1.6 55.2±0.3 700
40-2B- Bottom 0 nM PC 0.0023±0.0009 46±17 -
1 μM PC 17±4 50±1 7000
40-NC-TA 0 nM PC 0.024±0.004 11±1 -
1 μM PC 0.052±0.006 5.2±0.6 2

aValues presented at the average of three independent trials ± the standard deviation.

bPercent Cleaved is the percentage of DNA cleaved by SgrAI in the assay by the given rate constant (kobs). In cases where less than 100% is cleaved by the given rate constant, the remainder is cleaved by a nonaccelerated rate constant.

cRelative Acceleration is the ratio of kobs to that in the absence of added unlabeled DNA.

dFrom Park, et al., 2010[8].

e From Park, et al., 2010[10].

fRelative to cleavage of 40-2B-Top with no PC DNA.