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. 2014 Jul 19;65(18):5367–5384. doi: 10.1093/jxb/eru295

Table 1.

The list of contigs and CsMTP genes retrieved from the assembly of the cucumber genome (Chinese long cultivar, line 9930), showing significant homology with Arabidopsis thaliana MTP genes

MTP gene A. thaliana Gene ID in GenBank Accession no. of contigs containing cucumber MTPs Strand orientation Position of predicted CsMTP genes within contig No. of base pairs in predicted coding sequences of CsMTP genes No. of amino acids in predicted CsMTPs No. of predicted exons No. of predicted introns Coverage (%) E-value Identity of Arabidopsis and cucumber homologues (%) Nomenclature of novel cucumber MTPs
AtMTP1 (AtZAT1) At2g46800 ACHR01007740 – 7902–9149 1248 415 1 0 93 4e-112 73 CsMTP1
ACHR01007875 11 652–12 812 1161 386 1 0 36 3e-18 42 CsMTP4
ACHR01031515 4572–5819 1248 415 1 0 93 4e-112 73 CsMTP1
ACHR01049518 4391–5551 1161 386 1 0 36 3e-18 42 CsMTP4
AtMTP2 (AtMTPa1) At3g61940 ACHR01007740 – 7902–9149 1248 415 1 0 90 2e-57 69 CsMTP1
ACHR01007875 11 652–12 812 1161 386 1 0 65 3e-12 44 CsMTP4
ACHR01031515 4572–5819 1248 415 1 0 90 2e-57 69 CsMTP1
ACHR01049518 4391–5551 1161 386 1 0 65 3e-12 44 CsMTP4
AtMTP3 (AtMTPa2) At3g58810 ACHR01007740 – 7902–9149 1248 415 1 0 74 2e-96 67 CsMTP1
ACHR01007875 11 652–12 812 1161 386 1 0 31 3e-07 43 CsMTP4
ACHR01031515 4572–5819 1248 415 1 0 74 2e-96 67 CsMTP1
ACHR01049518 4391–5551 1161 386 1 0 31 3e-07 43 CsMTP4
AtMTP4 (AtMTPb1) At2g29410 ACHR01007740 – 7902–9149 1248 415 1 0 56 2e-09 42 CsMTP1
ACHR01007875 11 652–12 812 1161 386 1 0 23 6e-53 50 CsMTP4
ACHR01031515 4572–5819 1248 415 1 0 56 2e-09 42 CsMTP1
ACHR01049518 4391–5551 1161 386 1 0 23 6e-53 50 CsMTP4
AtMTP5 (AtMTPc2) At3g12100 ACHR01000847 – 24 592–29 892 1197 398 9 8 31 5e-16 63 CsMTP5
AtMTP6 (AtMTPc1) At2g47830 ACHR01000689 – 95 126–99 394 1587 528 13 12 57 8e-21 61 CsMTP6
AtMTP7 (AtMTPc4) At1g51610 ACHR01005111 – 88 454–93 800 1500 499 14 13 59 2e-27 68 CsMTP7
AtMTP8 (AtMTPc3) At3g58060 ACHR01011125 – 21 991–25 437 1209 402 7 6 46 2e-39 68 CsMTP8
AtMTP9 At1g79520 ACHR01003497 + 21 556–23 399 1230 409 6 5 68 2e-47 62 CsMTP9
ACHR01009952 + 4650–9492 1188 395 6 5 43 2e-26 53 CsMTP11
AtMTP10 At1g16310 ACHR01003497 + 21 556–23 399 1230 409 6 5 64 5e-42 60 CsMTP9
ACHR01009952 + 4650–9492 1188 395 6 5 45 1e-24 52 CsMTP11
AtMTP11 At2g39450 ACHR01003497 + 21 556–23 399 1230 409 6 5 36 2e-22 55 CsMTP9
ACHR01009952 + 4650–9492 1188 395 6 5 82 2e-78 75 CsMTP11
AtMTP12 At2g04620 ACHR01000689 + 109 178–111 346 2169 722 1 0 81 1e-167 62 CsMTP12