Table 2.
The list of contigs and CsMTP genes retrieved from the assembly of the cucumber genome (Borszczagowski cultivar, line B10), showing significant homology with Arabidopsis thaliana MTP genes
| MTP gene A. thaliana | Gene ID in GenBank | Accession no. of contigs containing cucumber MTP genes | Strand orientation | Position of predicted CsMTP genes within contig | No. of base pairs in predicted coding sequences of CsMTP genes | No. of amino acids in predicted CsMTP proteins | No. of predicted exons | No. of predicted introns | Coverage (%) | E-value | Identity of Arabidopsis and cucumber homologues (%) | Nomenclature of novel cucumber MTPs |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AtMTP1 (AtZAT1) | At2g46800 | ACYN01001940 | – | 15 689–16 936 | 1248 | 415 | 1 | 0 | 93 | 4e-112 | 73 | CsMTP1 |
| ACYN01002902 | 1744–2904 | 36 | 4e-17 | 42 | CsMTP4 | |||||||
| AtMTP2 (AtMTPa1) | At3g61940 | ACYN01001940 | – | 15 689–16 936 | 1248 | 415 | 1 | 0 | 90 | 2e-57 | 69 | CsMTP1 |
| ACYN01002902 | + | 1744–2904 | 1161 | 386 | 1 | 0 | 63 | 3e-11 | 44 | CsMTP4 | ||
| AtMTP3 (AtMTPa2) | At3g58810 | ACYN01001940 | – | 15 689–16 936 | 1248 | 415 | 1 | 0 | 74 | 2e-96 | 67 | CsMTP1 |
| ACYN01002902 | + | 1744–2904 | 1161 | 386 | 1 | 0 | 31 | 3e-07 | 43 | CsMTP4 | ||
| AtMTP4 (AtMTPb1) | At2g29410 | ACYN01002902 | + | 1744–2904 | 1161 | 386 | 1 | 0 | 56 | 2e-51 | 50 | CsMTP4 |
| ACYN01001940 | 15 689–16 936 | 23 | 2e-09 | 42 | CsMTP1 | |||||||
| AtMTP5 (AtMTPc2) | At3g12100 | ACYN01003111 | + | 27 541–32 838 | 1197 | 398 | 9 | 8 | 31 | 5e-16 | 63 | CsMTP5 |
| AtMTP6 (AtMTPc1) | At2g47830 | ACYN01005409 | + | 7550–11 818 | 1587 | 528 | 13 | 12 | 57 | 8e-21 | 61 | CsMTP6 |
| AtMTP7 (AtMTPc4) | At1g51610 | ACYN01001432 | + | 61 304–66 708 | 1566 | 521 | 14 | 13 | 68 | 2e-27 | 68 | CsMTP7 |
| AtMTP8 (AtMTPc3) | At3g58060 | ACYN01006819 | + | 2734–6177 | 1209 | 402 | 7 | 6 | 46 | 2e-39 | 68 | CsMTP8 |
| AtMTP9 | At1g79520 | ACYN01000092 | – | 25 640–27 482 | 1230 | 409 | 6 | 5 | 46 | 2e-47 | 62 | CsMTP9 |
| ACYN01003516 | + | 27 610–32 482 | 1197 | 398 | 6 | 5 | 79 | 1e-23 | 53 | CsMTP11 | ||
| AtMTP10 | At1g16310 | ACYN01000092 | _ | 25 640–27 482 | 1230 | 409 | 6 | 5 | 64 | 5e-42 | 60 | CsMTP9 |
| ACYN01003516 | + | 27 610–32 482 | 1197 | 398 | 6 | 5 | 45 | 7e-21 | 52 | CsMTP11 | ||
| AtMTP11 | At2g39450 | ACYN01000092 | _ | 25 640–27 482 | 1230 | 409 | 6 | 5 | 36 | 2e-22 | 55 | CsMTP9 |
| ACYN01003516 | + | 27 610–32 482 | 1197 | 398 | 6 | 5 | 82 | 3e-76 | 75 | CsMTP11 | ||
| AtMTP12 | At2g04620 | ACYN01004363 | + | 12 568–14 730 | 2163 | 720 | 1 | 0 | 81 | 2e-171 | 62 | CsMTP12 |