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. 2015 Apr 16;53(5):1648–1654. doi: 10.1128/JCM.03436-14

TABLE 1.

Cryptosporidium chipmunk genotype I specimens used in the study and their subtype identities at the gp60 and mucin loci

Host Specimen Source gp60a Mucin
Human 39969 Maine XIVaA16G2T2 MCI
37187 Vermont XIVaA17G2T3 MCI
37189 Vermont XIVaA16G2T2 MCI
37555 Vermont XIVaA16G2T2 MCI
37763 Vermont XIVaA14G2T2 MCI
37764 Vermont XIVaA15G2T3 MCI
41602 Vermont XIVaA15G2T3 MCI
41604 Vermont XIVaA16G2T2 MCI
39974 Wisconsin XIVaA16G2T1 b
39975 Wisconsin XIVaA16G2T1 MCI
40694 Minnesota XIVaA16G2T1 MCII
40693 Minnesota XIVaA17G2T2 MCII
40695 Minnesota XIVaA20G2T2 MCII
40696 Minnesota XIVaA20G2T2 MCII
40697 Minnesota XIVaA19G2T2a MCII
40702 Minnesota XIVaA14G2T1 MCII
40703 Minnesota XIVaA18G2T1b MCI
40705 Minnesota XIVaA18G2T1b MCII
40706 Minnesota MCII
40707 Minnesota MCII
40709 Minnesota XIVaA19G2T2b MCII
39970 Sweden XIVaA20G2T1 MCI
39971 Sweden XIVaA20G2T1 MCI
39972 Sweden XIVaA20G2T1 MCI
40136 Sweden XIVaA20G2T1 MCI
Eastern gray squirrel 13469 New York XIVaA18G2T2 MCII
Chipmunk 12958 New York XIVaA18G2T1a MCII
Deer mouse 14985 New York XIVaA18G2T1a MCI
Storm water 8060 New York XVIa (skunk genotype?) MCII
8062 New York XIIb (C. ubiquitum) MCII
6141 New York XIVaA15G2T1 MCII
6143 New York XIIb (C. ubiquitum) MCII
a

Letters a and b following the trinucleotide repeat differentiate subtypes which have the same number of trinucleotide repeats but different trinucleotide repeat order.

b

—, no PCR amplification.