TABLE 1.
Result | No. of genomes (% of total) |
||
---|---|---|---|
Reads mapping, CDC strains | Reads mapping, GenomeTrakr strains | Assembled genomes | |
Expected serotypea | 304 (98.7) | 3,061 (92.6) | 324 (91.5) |
Unexpected serotype | 2 (0.65) | 205 (6.2)b | 11 (3.1)b |
Partial or no serotypec | 2 (0.65) | 40 (1.2) | 19 (5.4) |
Total tested | 308 | 3306 | 354 |
The identification of the predicted serotype was considered correct when the serotype antigens detected corresponded to the antigens detected by conventional methods. See Text S1 in the supplemental material for a discussion of interpretation of serotype results. For GenomeTrakr and genome assembly datasets, serotype prediction in consensus with annotated serotype was considered correct.
Numbers represent serotype predictions inconsistent with the annotated serotype; the accuracy of the annotated serotype is unknown.
Some or all of the expected serotype determinants were not detected.