. 2015 Apr 16;53(5):1573–1581. doi: 10.1128/JCM.03534-14

TABLE 1.

C. pecorum clinical samples and sequencing output

Strain	Host	Disease^a	Amt of DNA used as template^b (ng)	Total no. of input C. pecorum genome copies^c	Total no. of reads	Mapped reads^d		Mean read depth	Read coverage (SD)	Accession no.
Strain	Host	Disease^a	Amt of DNA used as template^b (ng)	Total no. of input C. pecorum genome copies^c	Total no. of reads	No.	%	Mean read depth	Read coverage (SD)	Accession no.
C. pecorum NSW/Bov/SBE	Cattle	SBE	1,011.35	4.6 ×10¹²	37,110,550	36,996,629	99.69	2,632	250.81	SRR1693788
C. pecorum Gun/koa1/Ure	Koala	UTI	209.90	1.6 ×10⁵	13,281,012	13,023,096	98.06	184	33.70	SRR1693763
C. pecorum SA/k2/UGT	Koala	UTI	453.92	2,253	4,623,524	3,874,162	83.79	44	18.70	SRR1693792
C. pecorum Mer/Ovi1/Jnt	Ovine	Polyarthritis	157.63	2,628	1,105,062	1,063,335	96.22	12	29.90	SRR1693791
C. pecorum Nar/S22/RE	Ovine	Conjunctivitis	173.21	10,299	4,890,048	3,576,983	73.15	11	139.47	SRR1693793
C. pecorum Nar/S22/Rec	Ovine	Conjunctivitis	84.45	2,674	27,257,774	21,705,968	79.63	21	116.61	SRR1693794
C. pecorum Nar/S42/LE	Ovine	Conjunctivitis	129.94	8,662	26,729,184	185,341	0.69	6	1.64	SRR1693795

SBE, sporadic bovine encephalomyelitis; UTI, urinary tract infection.

DNA concentration includes host and other resident microbiota DNA.

The number of C. pecorum genome copies determined by qPCR that were used as input in the library preparation.

Reads were mapped to the complete C. pecorum E58 genome.