|
0h vs. 24h
|
Pathway
|
DEGs with pathway annotation (1121)
|
All genes with pathway annotation (10430)
|
Q value
|
Pathway ID
|
| 1 |
Ribosome |
102 (9.1%) |
690 (6.62%) |
1.591874e-02 |
ko03010 |
| 2 |
Biosynthesis of phenylpropanoids |
73 (6.51%) |
503 (4.82%) |
9.801425e-02 |
ko01061 |
| 3 |
Biosynthesis of alkaloids derived from shikimate pathway |
54 (4.82%) |
355 (3.4%) |
9.801425e-02 |
ko01063 |
| 4 |
Phenylalanine, tyrosine and tryptophan biosynthesis |
16 (1.43%) |
78 (0.75%) |
1.129080e-01 |
ko00400 |
| 5 |
Steroid biosynthesis |
9 (0.8%) |
36 (0.35%) |
1.515227e-01 |
ko00100 |
| 6 |
Arginine and proline metabolism |
18 (1.61%) |
98 (0.94%) |
1.807406e-01 |
ko00330 |
| 7 |
Metabolism of xenobiotics by cytochrome P450 |
18 (1.61%) |
104 (1%) |
2.668737e-01 |
ko00980 |
| 8 |
Valine, leucine and isoleucine biosynthesis |
10 (0.89%) |
48 (0.46%) |
2.668737e-01 |
ko00290 |
| 9 |
Vitamin B6 metabolism |
4 (0.36%) |
12 (0.12%) |
2.668737e-01 |
ko00750 |
| 10 |
Metabolic pathways |
293 (26.14%) |
2489 (23.86%) |
2.668737e-01 |
ko01100 |
|
0h vs. 48h
|
Pathway
|
DEGs with pathway annotation (1258)
|
All genes with pathway annotation (10430)
|
Q value
|
Pathway ID
|
| 1 |
Ribosome |
120 (9.54%) |
690 (6.62%) |
5.609921e-04 |
ko03010 |
| 2 |
Arginine and proline metabolism |
22 (1.75%) |
98 (0.94%) |
5.239005e-02 |
ko00330 |
| 3 |
Steroid biosynthesis |
10 (0.79%) |
36 (0.35%) |
1.410173e-01 |
ko00100 |
| 4 |
Biosynthesis of phenylpropanoids |
78 (6.2%) |
503 (4.82%) |
1.593453e-01 |
ko01061 |
| 5 |
Phenylalanine, tyrosine and tryptophan biosynthesis |
16 (1.27%) |
78 (0.75%) |
2.798326e-01 |
ko00400 |
| 6 |
Metabolic pathways |
329 (26.15%) |
2489 (23.86%) |
2.798326e-01 |
ko01100 |
| 7 |
Fructose and mannose metabolism |
19 (1.51%) |
101 (0.97%) |
3.308341e-01 |
ko00051 |
| 8 |
Benzoxazinoid biosynthesis |
10 (0.79%) |
44 (0.42%) |
3.308341e-01 |
ko00402 |
| 9 |
Taurine and hypotaurine metabolism |
3 (0.24%) |
7 (0.07%) |
3.490632e-01 |
ko00430 |
| 10 |
Phenylpropanoid biosynthesis |
41 (3.26%) |
260 (2.49%) |
3.490632e-01 |
ko00940 |
|
24h vs. 48h
|
Pathway
|
DEGs with pathway annotation (222)
|
All genes with pathway annotation (10430)
|
Q value
|
Pathway ID
|
| 1 |
Metabolic pathways |
81 (36.49%) |
2489 (23.86%) |
4.209581e-04 |
ko01100 |
| 2 |
Flavonoid biosynthesis |
9 (4.05%) |
124 (1.19%) |
2.959463e-02 |
ko00941 |
| 3 |
Biosynthesis of phenylpropanoids |
18 (8.11%) |
503 (4.82%) |
2.443969e-01 |
ko01061 |
| 4 |
Steroid biosynthesis |
3 (1.35%) |
36 (0.35%) |
4.103692e-01 |
ko00100 |
| 5 |
Biosynthesis of alkaloids derived from shikimate pathway |
12 (5.41%) |
355 (3.4%) |
6.987740e-01 |
ko01063 |
| 6 |
Stilbenoid, diarylheptanoid and gingerol biosynthesis |
6 (2.7%) |
146 (1.4%) |
7.249746e-01 |
ko00945 |
| 7 |
Fatty acid elongation in mitochondria |
1 (0.45%) |
5 (0.05%) |
7.249746e-01 |
ko00062 |
| 8 |
Phenylpropanoid biosynthesis |
9 (4.05%) |
260 (2.49%) |
7.249746e-01 |
ko00940 |
| 9 |
Glyoxylate and dicarboxylate metabolism |
3 (1.35%) |
59 (0.57%) |
7.536070e-01 |
ko00630 |
| 10 |
Mismatch repair |
2 (0.9%) |
32 (0.31%) |
7.536070e-01 |
ko03430 |
