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. Author manuscript; available in PMC: 2015 Dec 1.
Published in final edited form as: Mol Carcinog. 2014 Oct 18;54(12):1668–1677. doi: 10.1002/mc.22238

Table 3.

Odds Ratios (ORs) and 95% Confidence Intervals (CIs) for the Association Between Single Nucleotide Polymorphisms (SNPs) on AURKA and Subtype of Breast Cancer

SNP Luminal A (Ncases = 674)
Luminal B (Ncases = 114)
HER2+/ER− (Ncases = 94)
Basal-like (Ncases = 199)
Unclassified (Ncases = 129)
ORa (95% CI) Padj b ORa (95% CI) Padj b ORa (95% CI) Padj b ORa (95% CI) Padj b ORa (95% CI) Padj b
rs1047972
AG + AA 0.96 (0.78, 1.18) 0.90 0.75 (0.48, 1.18) 0.87 0.84 (0.52, 1.36) 0.90 1.34 (0.97, 1.85) 0.76 0.93 (0.62, 1.40) 0.90
GG Referent Referent Referent Referent Referent
rs1468056
CG + CC 1.28 (1.03, 1.59) 0.38 1.06 (0.68, 1.64) 0.95 1.04 (0.64, 1.70) 0.96 1.13 (0.78, 1.63) 0.90 0.90 (0.58, 4.41) 0.90
GG Referent Referent Referent Referent Referent
rs16979826
CT + CC 0.81 (0.54, 1.21) 0.90 0.69 (0.28, 1.72) 0.90 2.14 (1.06, 4.29) 0.41 0.88 (0.51, 1.50) 0.90 1.18 (0.65, 2.15) 0.90
TT Referent Referent Referent Referent Referent
rs16979829
GT + GG 0.92 (0.69, 1.23) 0.90 0.97 (0.54, 1.77) 0.96 1.05 (0.57, 1.92) 0.96 1.22 (0.82, 1.82) 0.90 1.03 (0.63, 1.69) 0.96
TT Referent Referent Referent Referent Referent
rs16979865
CA + CC 1.20 (0.93, 1.55) 0.79 0.71 (0.39, 1.31) 0.90 1.01 (0.56, 1.82) 0.98 0.91 (0.59, 1.41) 0.90 1.05 (0.64, 1.73) 0.96
AA Referent Referent Referent Referent Referent
rs2180691
AG + AA 0.96 (0.77, 1.20) 0.90 1.02 (0.65, 1.61) 0.96 1.25 (0.74, 2.11) 0.90 0.96 (0.64, 1.43) 0.96 1.01 (0.62, 1.65) 0.98
GG Referent Referent Referent Referent Referent
rs2273535
TA + TT 0.96 (0.78, 1.17) 0.90 1.30 (0.87, 1.94) 0.87 1.11 (0.71, 1.74) 0.90 0.81 (0.58, 1.13) 0.87 1.36 (0.92, 2.00) 0.79
AA Referent Referent Referent Referent Referent
rs2298016
CG + CC 0.96 (0.79, 1.16) 0.90 1.14 (0.77, 1.70) 0.90 1.38 (0.90, 2.11) 0.79 0.67 (0.48, 0.93) 0.38 1.34 (0.93, 1.95) 0.79
GG Referent Referent Referent Referent Referent
rs6014711
AG + AA 0.95 (0.77, 1.17) 0.90 0.74 (0.47, 1.17) 0.87 0.79 (0.48, 1.29) 0.90 1.33 (0.97, 1.84) 0.76 0.93 (0.61, 1.40) 0.90
GG Referent Referent Referent Referent Referent
rs6024840
GA + GG 0.95 (0.78, 1.16) 0.90 1.21 (0.80, 1.84) 0.90 1.28 (0.80, 2.05) 0.90 0.76 (0.54, 1.06) 0.79 1.00 (0.66, 1.50) 0.99
AA Referent Referent Referent Referent Referent
rs6092309
AG + AA 0.61 (0.41, 0.92) 0.38 0.95 (0.43, 2.09) 0.96 0.69 (0.29, 1.61) 0.90 0.75 (0.44, 1.25) 0.90 0.62 (0.32, 1.20) 0.79
GG Referent Referent Referent Referent Referent
rs6099122
GT + GG 1.08 (0.81, 1.42) 0.90 1.06 (0.58, 1.92) 0.96 1.56 (0.86, 2.83) 0.79 1.15 (0.77, 1.71) 0.90 0.71 (0.44, 1.17) 0.87
TT Referent Referent Referent Referent Referent
rs6099126
TC + TT 1.05 (0.79, 1.39) 0.90 0.83 (0.45, 1.52) 0.90 1.35 (0.73, 2.49) 0.90 1.10 (0.73, 1.66) 0.90 0.86 (0.53, 1.41) 0.90
CC Referent Referent Referent Referent Referent
rs6099128
GT + GG 0.76 (0.60, 0.95) 0.38 1.09 (0.70, 1.69) 0.90 0.86 (0.52, 1.41) 0.90 0.54 (0.37, 0.80) 0.19 0.61 (0.38, 0.97) 0.41
TT Referent Referent Referent Referent Referent
rs1468055
AC + AA 1.01 (0.81, 1.27) 0.96 1.28 (0.82, 2.00) 0.90 0.80 (0.46, 1.37) 0.90 1.10 (0.75, 1.63) 0.90 0.79 (0.48, 1.30) 0.90
CC Referent Referent Referent Referent Referent
rs6024836
AG + AA 1.02 (0.82, 1.27) 0.96 0.90 (0.58, 1.39) 0.90 0.85 (0.52, 1.39) 0.90 0.85 (0.59, 1.24) 0.90 0.63 (0.41, 0.98) 0.48
GG Referent Referent Referent Referent Referent
rs2064863
AC + AA 0.87 (0.69, 1.11) 0.90 1.25 (0.76, 2.06) 0.90 1.12 (0.64, 1.97) 0.90 0.93 (0.61, 1.43) 0.90 0.94 (0.56, 1.58) 0.95
CC Referent Referent Referent Referent Referent
rs6099119
GA + GG 1.15 (0.68, 1.93) 0.90 0.28 (0.04, 2.11) 0.87 0.58 (0.13, 2.49) 0.90 1.61 (0.85, 3.06) 0.90 1.37 (0.62, 3.05) 0.90
AA Referent Referent Referent Referent Referent
rs911162
AG + AA 0.83 (0.50, 1.40) 0.90 0.85 (0.29, 2.47) 0.93 0.87 (0.30, 2.55) 0.95 1.32 (0.70, 2.51) 0.90 0.68 (0.26, 1.79) 0.90
GG Referent Referent Referent Referent Referent
a

Case-control odds ratio and 95% confidence interval adjusted for age, self-identified race, African ancestry and offset term.

b

False discovery rate (FDR) adjusted P-values.