Table 2. Genes near the chromosome 4 association with LDL.
| Gene name | OMIM ID | hg19 Distance from association (kb) | cM Distance from association |
|---|---|---|---|
| RASSF6 | 612620 | 24 | 0.004 |
| AFM | 104145 | 140 | 0.023 |
| AFP | 104150 | 189 | 0.033 |
| ALB | 103600 | 223 | 0.044 |
| ANKRD17 | Not in OMIM | 386 | 0.061 |
| COX18 | 610428 | 575 | 0.070 |
| IL8 | 146930 | 96 | 0.140 |
| CXCL6 | 138965 | 192 | 0.162 |
| PF4V1 | 173461 | 209 | 0.170 |
| CXCL1 | 155730 | 225 | 0.240 |
| PF4 | 173460 | 337 | 0.296 |
| PPBP | 121010 | 343 | 0.305 |
| CXCL5 | 600324 | 351 | 0.315 |
| CXCL3 | 139111 | 392 | 0.371 |
| PPBPL2 | 611591 | 410 | 0.377 |
| ADAMTS3 | 605011 | 1076 | 0.378 |
| CXCL2 | 139110 | 453 | 0.389 |
| MTHFD2L | 614047 | 470 | 0.400 |
| LOC541467 | Not in OMIM | 512 | 0.435 |
| BC016361 | Not in OMIM | 634 | 0.508 |
| EPGN | Not in OMIM | 664 | 0.534 |
| EREG | 602061 | 721 | 0.642 |
| NPFFR2 | 607449 | 1491 | 0.730 |
| GC | 139200 | 1840 | 0.847 |
| SLC4A4 | 603345 | 2072 | 1.068 |
| BTC | 600345 | 1161 | 1.162 |
| PARM1 | Not in OMIM | 1348 | 1.503 |
| AK027257 | Not in OMIM | 1371 | 1.537 |
| DCK | 125450 | 2613 | 1.704 |
| MOBKL1A | 609282 | 2656 | 1.715 |
| GRSF1 | 604851 | 2804 | 1.736 |
| RUFY3 | 611194 | 2837 | 1.740 |
| UTP3 | 611614 | 2954 | 1.761 |
| IGJ | 147790 | 2978 | 1.816 |
| ENAM | 606585 | 2998 | 1.882 |
| RCHY1 | 607680 | 1894 | 1.988 |
| THAP6 | 612535 | 1930 | 1.991 |
| DKFZp313E1330 | Not in OMIM | 1930 | 1.991 |
| DKFZp686B2235 | Not in OMIM | 1930 | 1.991 |
The association's position and a gene's distance from the association are defined in Materials and Methods. Genes are listed in order of ascending cM distance from the association. cM was calculated from hg18 bp positions using linear interpolation and the HapMap genetic map.16 hg19 distances were obtained from hg18 bp positions using the liftOver program.