Table 3.
The number of TP (true positive), and FP (false positive) in the re-aligned reads from single-end simulated datasets.
| 50-bp | 75-bp | 100-bp | |||||||
|---|---|---|---|---|---|---|---|---|---|
| #RA | #TP | #FP | #RA | #TP | #FP | #RA | #TP | #FP | |
| RAUR(BWA) | 312,949 | 284,796 | 28,153 | 658,289 | 629,733 | 28,556 | 2,222,453 | 2,197,995 | 24,458 |
| RAUR(Bowtie2) | 632,552 | 519,586 | 112,966 | 388,654 | 293,101 | 95,553 | 593,629 | 532,641 | 60,988 |
#RA is the number of confidently re-aligned reads with mapping quality not less than 10, #TP is the number of confidently and correctly re-aligned reads, and #FP is the number of confidently but incorrectly re-aligned reads.