Table 4.
The number of TP (true positive), and FP (false positive) in the re-aligned reads from paired-end simulated datasets.
| 50-bp | 75-bp | 100-bp | |||||||
|---|---|---|---|---|---|---|---|---|---|
| #RA | #TP | #FP | #RA | #TP | #FP | #RA | #TP | #FP | |
| RAUR(BWA) | 57,206 | 53,440 | 3,766 | 79,892 | 77,913 | 1,979 | 719,859 | 709,445 | 10,414 |
| RAUR(Bowtie2) | 123,759 | 108,171 | 15,588 | 138,273 | 126,500 | 11,773 | 223,491 | 209,981 | 13,510 |
#RA is the number of confidently re-aligned reads with mapping quality not less than 10, #TP is the number of confidently and correctly re-aligned reads, and #FP is the number of confidently but incorrectly re-aligned reads.