Table 6.
The alignment rate and precision of each alignment method on single-end real data with different read length.
| Alignment Rate | |||
|---|---|---|---|
| SRR006273(76 bp) | ERR008838(76 bp) | ERR008843(83 bp) | |
| BWA | 69.0456 | 77.1065 | 81.1342 |
| BWA(mem) | 75.3120 | 80.3020 | 83.2176 |
| RAUR(BWA) | 83.0732 | 83.8950 | 86.3092 |
| Bowtie2 | 70.6717 | 78.7660 | 82.3776 |
| Bowtie2(local) | 80.6902 | 85.9375 | 88.2963 |
| RAUR(Bowtie2) | 81.0039 | 83.8124 | 86.0461 |
There are 10,685,743 single-end reads with length 76-bp in SRR006273, 12,564,212 with length 76-bp in ERR008838, and 15,929,373 with length 83-bp in ERR008843.