Table 7.
The alignment rate and precision of each alignment method on paired-end real data with different read length.
| Alignment Rate | |||
|---|---|---|---|
| ERR007641(51 bp) | SRR019044(76 bp) | ERR050728(90 bp) | |
| BWA | 82.7438 | 80.9078 | 95.7637 |
| BWA(mem) | - | 82.3725 | 96.1319 |
| RAUR(BWA) | 84.9410 | 85.8255 | 96.0608 |
| Bowtie2 | 80.1309 | 79.8907 | 94.0414 |
| Bowtie2(local) | - | 87.4895 | 96.3645 |
| RAUR(Bowtie2) | 82.7563 | 86.2557 | 94.4253 |
There are 2,977,726 pairs reads with length 51-bp in ERR007641, 9,661,679 pairs with length 76-bp in SRR019044, and 676,633 pairs with length 90-bp in ERR050728.