Table 2.
Summary of sequence assembly and function annotation of the C. taliensis transcriptome
| Number of sequences | |
|---|---|
| Assembly | |
| Total number of unigenes | 67,923 |
| Total bases (Mb) | 46.55 |
| Mean unigene length (bp) | 685 |
| N50 (bp) | 995 |
| Number of unigene ( ≥500 bp) | 30,033 |
| Number of unigene ( ≥1 kb) | 13,799 |
| Annotation | |
| Protein database searches | |
| Transcript BLASTx against NR | 38,947 |
| Transcript BLASTx against UniRef90 | 39,111 |
| Transcript BLASTx against TAIR10 | 33,607 |
| Transcript BLASTx against KOG | 22,350 |
| Transcript BLASTx against Pfam | 20,748 |
| All annotated transcript | 39,475 |
| Transcripts matching all five databases | 13,698 |
| Functional classification and pathway mapping | |
| Transcripts annotated with Gene Ontology (GO) terms | 24,988 |
| Transcripts assigned with Enzyme Commission (EC) numbers | 8,936 |
| Transcript annotations against KEGG | 13,134 |