Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2015 Apr 20;10(4):e0124579. doi: 10.1371/journal.pone.0124579

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© 2015 Giollo et al

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.

PMC Copyright notice

Fig 4 — The tool requires just genotype data and an haplotype table for its execution. Genotype must be specified in a tabular file similar to VCF format, where chromosome, genomic position, nucleotides ad zygosity are specified. Haplotypes are defined in a tabular file, and each row specify the expected SNVs of a target phenotype. See README file of the application for format details. BOOGIE search for key variants in the input genotype, and optimize their assignment to a haplotypes with known phenotype according to the 1-nearest neighbour algorithm. The SNV permutation with best score is the one with highest phenotype likelihood.