Figure 5.

Functional annotation and microsyntenic links of two L. angustifolius scaffolds from contig 2 carrying the LangCHIL2 gene. The functional annotations of two scaffolds are presented on upper plot above the gray bar. Black bars indicate repetitive elements, whereas blue and red correspond to L. luteus and L. albus transcriptome reads, respectively (Parra-González et al., 2012; O'Rourke et al., 2013). Rectangles with numbers 7–10, which refer to annotation data presented in the Table 4, mark predicted genes. Microsyntenic links between the scaffolds and genomic sequences of six legume species are shown on Genome Synteny Viewer diagrams (Revanna et al., 2011), below the gray bar. Each diagram comprises two horizontal lines. The upper line shows the sequence of L. angustifolius scaffold: 48639 (KB425167.1) on the left column and 65565 (KB430490.1) on the right. The lower line shows the corresponding region of a model legume genome. The scales of the bottom bars vary by species, thus the chromosome localizations (kb) are given. Homologs links are colored consecutively to portray the order and orientation of the syntenic blocks. To simplify the illustration, scaffold 48639 is presented as the reverse-complement sequence. LangCHIL2 gene is located in KB430490.1 from 7703 to 9623 bp.