Table 1. Reference genome assemblies of 10 leaf-color rice accessions onto reference genome.
Sample | Number of reads | Mapped reads | All mapped(bp) | 3+mapped(bp)a | Coverage | |||
---|---|---|---|---|---|---|---|---|
Number | Coverage | Depth | Size(bp) | Coverage | ||||
D052 | 185,047,892 | 147,984,209 | 99.5% | 39.04 | 364,932,999 | 97.6% | 360,269,782 | 96.4% |
D056 | 190,240,726 | 155,463,792 | 99.5% | 41.02 | 364,928,017 | 97.6% | 359,714,657 | 96.2% |
D101 | 189,411,406 | 154,914,741 | 99.4% | 40.86 | 365,135,240 | 97.7% | 360,571,370 | 96.4% |
D120 | 177,906,528 | 143,375,391 | 99.5% | 37.85 | 364,970,666 | 97.6% | 360,416,405 | 96.4% |
D122 | 202,236,270 | 162,690,260 | 99.4% | 42.94 | 363,861,008 | 97.4% | 357,142,960 | 95.5% |
D128 | 194,082,738 | 156,793,587 | 99.3% | 41.38 | 364,940,501 | 97.6% | 360,174,165 | 96.3% |
D131 | 176,233,928 | 145,215,869 | 99.4% | 38.36 | 364,151,236 | 97.4% | 358,394,847 | 95.9% |
Hwangdo | 166,716,980 | 132,359,524 | 97.9% | 34.55 | 342,025,104 | 91.5% | 329,787,805 | 88.2% |
Jado | 167,790,976 | 363,379,096 | 97.2% | 36.48 | 363,379,096 | 97.2% | 354,890,848 | 94.9% |
Dongjin | 164,390,288 | 136,409,677 | 99.5% | 36.03 | 364,784,522 | 97.6% | 358,413,928 | 95.9% |
Average | 181,405,773 | 169,858,615 | 99.1% | 38.9 | 362,310,839 | 96.9% | 355,977,677 | 95.2% |
3+mapped(bp)a: base pair of nucleotide which mapped over 3 reads on one site.