Table 1. Reference genome assemblies of 10 leaf-color rice accessions onto reference genome.

Sample	Number of reads	Mapped reads			All mapped(bp)		3+mapped(bp)a	Coverage
		Number	Coverage	Depth	Size(bp)	Coverage
D052	185,047,892	147,984,209	99.5%	39.04	364,932,999	97.6%	360,269,782	96.4%
D056	190,240,726	155,463,792	99.5%	41.02	364,928,017	97.6%	359,714,657	96.2%
D101	189,411,406	154,914,741	99.4%	40.86	365,135,240	97.7%	360,571,370	96.4%
D120	177,906,528	143,375,391	99.5%	37.85	364,970,666	97.6%	360,416,405	96.4%
D122	202,236,270	162,690,260	99.4%	42.94	363,861,008	97.4%	357,142,960	95.5%
D128	194,082,738	156,793,587	99.3%	41.38	364,940,501	97.6%	360,174,165	96.3%
D131	176,233,928	145,215,869	99.4%	38.36	364,151,236	97.4%	358,394,847	95.9%
Hwangdo	166,716,980	132,359,524	97.9%	34.55	342,025,104	91.5%	329,787,805	88.2%
Jado	167,790,976	363,379,096	97.2%	36.48	363,379,096	97.2%	354,890,848	94.9%
Dongjin	164,390,288	136,409,677	99.5%	36.03	364,784,522	97.6%	358,413,928	95.9%
Average	181,405,773	169,858,615	99.1%	38.9	362,310,839	96.9%	355,977,677	95.2%

3+mapped(bp)^a: base pair of nucleotide which mapped over 3 reads on one site.